Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00499 ATGAATTTCAAGGATTTTGGGAGTGACCCATCTGCCGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATCTACTCGCTCACATTCGATGAGTTTCAGAGTATGGGGAGTATAGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTGTTGAAGAACATTTGGAGCGCTGAAGAAATGCAAACGATGGCATCTTCTGCTGCTGTTGTTGCTGTTGCTGCTGCTGCTGCTAAAGAAGGGGCTGGTGGTGTTAATGGTAGTGGTGGGTATTTGCAGAGACAAGGCTCTTTGACACTGCCACGGACACTCAGCCAGAAGAAGGTGGATGAGGTATGGAAGGACATAATGGATGAACATGGTGGTTCTAAAGATGGGAGTATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAGGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAATGGAAACCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAACCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGCTGCCTTTGTCTAGTGATGGGATTATGGGGCTTGCGGATCAAAGGTTGAGCTCAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGGATGGGAGTGGTTAGCTTAGCAGCTGGGGCCATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTATGCGCTTAATGGAGTGCGGGGGAGGAGATGTAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGCAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCTTACACGATGGAGCTGGAAGCGGAGGTGGCGAAGCTAAAAGAGGAAAACCAAGAACTCCGACAAAAACAGAGTGAGCTTGAGCTTGTTAATCAAGTAACGGGCATCACCAATTCTCAATTATTATGTTGTGTGGTTGTTGCAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCAGACTGGTCCGTGGTGATTTCGGAGGACGTTATCCGATCTCGGGCCAAAAGAATAATGCTATAG 1293 47.72 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQSMGSIGKDFGSMNMDELLKNIWSAEEMQTMASSAAVVAVAAAAAKEGAGGVNGSGGYLQRQGSLTLPRTLSQKKVDEVWKDIMDEHGGSKDGSIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGNPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLSSDGIMGLADQRLSSNLMQGSALQGGRMGVVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYALNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAYTMELEAEVAKLKEENQELRQKQSELELVNQVTGITNSQLLCCVVVAGRNHGNAQEPGIESNGYTTRNKETMLKTNADWSVVISEDVIRSRAKRIML 430
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3067064 3070207 + CmoCh12G004990.1 Cmo12g00499 393187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00499 430 Gene3D - 310 364 - -
Cmo12g00499 430 SMART brlzneu 308 372 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 Coils Coil 328 365 - -
Cmo12g00499 430 MobiDBLite consensus disorder prediction 1 26 - -
Cmo12g00499 430 SUPERFAMILY Leucine zipper domain 312 360 IPR046347 GO:0003700|GO:0006355
Cmo12g00499 430 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 178 - -
Cmo12g00499 430 CDD bZIP_plant_BZIP46 312 359 - -
Cmo12g00499 430 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 315 330 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 7 178 IPR043452 GO:0003700|GO:0045893
Cmo12g00499 430 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 192 360 IPR043452 GO:0003700|GO:0045893
Cmo12g00499 430 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 192 360 - -
Cmo12g00499 430 Pfam bZIP transcription factor 312 360 IPR004827 GO:0003700|GO:0006355
Cmo12g00499 430 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 310 360 IPR004827 GO:0003700|GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00179 Cmo12g00499 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00499 Cmo-Chr12:3067064 Cmo04g02610 Cmo-Chr4:19022595 1.16E-43 dispersed
Cmo11g01370 Cmo-Chr11:9574499 Cmo12g00499 Cmo-Chr12:3067064 3.46E-86 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo19g00618 Cmo-Chr19:6778771 1.45E-90 wgd
Cmo12g00499 Cmo-Chr12:3067064 Cmo05g00179 Cmo-Chr5:772776 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10733 PF00170 bZIP_1 2.80E-13 CL0018 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00499 K14432 - csv:101223043 514.612