Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g00574 ATGGCCAGTACAAATTCTGTCATTGTAGGTGAGATTCTGCCTCTTCGCACTCCAATTGCAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGGCCACTGCCCCGCCACGGAACGATATGGGGGATGTTTCCGGAGGTTGTTTGAATCTCTCTGGTAATGCTGAGTTTCAAGATCAGCTAGCAGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGAATGCAAAAGATTCAGCATTTTCAACCCCTCAGTTCCATCAGTTAGGGACTTTTAGAACTCGCTTCGAACACAGTTCCTCTAATGCTTCAAACTCTTCATTTGCAAGTTCTCTAAACTGTGAAGGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCCTTATAATCAGCCAATTGCTAGGGGTAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAAAACTTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTTGCCACATCCAAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGCTGACTTTTTCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGACCTCTCTCTAAGTTACAATTATGGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAAGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTGCCATTCTCATCAAGTTCCCTGGAGACTCAATGGCCGAAACCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCACCGATTTGGATCCTCGCTTGCATTTTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGAATTCTAACACAGTGTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCAGAATCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCACTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAATTCCTTTCAAAATGATGAAGGATGA 1503 43.18 MASTNSVIVGEILPLRTPIAAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMATAPPRNDMGDVSGGCLNLSGNAEFQDQLAGAIPIASVSPVNAKDSAFSTPQFHQLGTFRTRFEHSSSNASNSSFASSLNCEGDESLCNANNEWENGHFPYNQPIARGNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSKPVIVGGTNFLDQYSQLTFSGATQPCLNNTELACNSMDLSLSYNYGSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKPSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAATDLDPRLHFHYTYQTITSVYKSLREKITNCILAMGMNSNTVCTKEKEKSFETTFIQNQWALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRNSFQNDEG 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 3539266 3541247 - CmoCh12G005740.1 Cmo12g00574 393262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g00574 500 PANTHER HOMEOBOX PROTEIN ATH1 61 499 - -
Cmo12g00574 500 SUPERFAMILY Homeodomain-like 424 489 IPR009057 -
Cmo12g00574 500 ProSiteProfiles 'Homeobox' domain profile. 417 480 IPR001356 GO:0003677
Cmo12g00574 500 SMART prehox3 254 377 IPR006563 -
Cmo12g00574 500 Pfam Homeobox KN domain 437 476 IPR008422 GO:0003677|GO:0006355
Cmo12g00574 500 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 61 499 - -
Cmo12g00574 500 SMART HOX_1 420 484 IPR001356 GO:0003677
Cmo12g00574 500 Pfam Associated with HOX 260 376 IPR006563 -
Cmo12g00574 500 Gene3D - 423 485 - -
Cmo12g00574 500 CDD homeodomain 420 481 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g00107 Cmo12g00574 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g00574 Cmo-Chr12:3539266 Cmo14g00358 Cmo-Chr14:1624151 2.07E-43 dispersed
Cmo12g00574 Cmo-Chr12:3539266 Cmo05g00107 Cmo-Chr5:431215 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10744 PF07526 POX 1.80E-15 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g00574 - - mcha:111004597 705.286