Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo12g01288 ATGATCATTCCGATGCCCTTCTCGAAGAATGTCGCGTTTGTTAATGTAATTCGTGTATATTTGCACAACCAAAAGATGAAACTTTATCTTAAGAAATTGAGTATTGTGTGGGATTTGAATTCGATGGGGGAAGAAGATTCCGCTGGTGCGCCTCCGAAGAAGGCTCAATCAGATGGTGCAGCGTTGAGTAATTCTTCGTCATCTGATATTCCGTCTAAGAAGCTCGCTAGGCAGCTCGATTTCACTGGCTATGGAGGCGCTCCGCATCCTCAATCTCATTCAAACTCGCATTCACAGTCGCAGGCTCCATTAGTTTCTCAGAATCTTCAGCAAGCTCAGCCGAAGCCACAGCCGCAGATGGTGGCCGCGTCGATCGCACCTTTGGCGCCTCATTCGTCAGTTAGAACTGTGAAATCAGATTCCCCTATGTCAAGAGCAAGGCCTGCTGTTGAAGCTAAAGATAGTACTCCTAAGAAGCAAAAACAGTGTAACTGTAAACATTCGCGGTGTCTAAAATTGTACTGTGAATGCTTTGCTTCTGGAATATACTGTGATGGCTGCAACTGCTTAAATTGTTATAACAATGTTGAAAATGATGCTGCTAGAAGAGAAGCAGTCGAAGCTACATTAGAGCGTAATCCAAATGCATTTCGACCAAAAATTGCTAGCAGTCCTCATGGAATGCGGGACAACCGAGAGGAGGCGGGGGAGCTGCTGATGTTGGGTAAGCACAACAAGGGATGCCACTGCAAGAAATCGGGTTGTCTTAAAAAATATTGCGAGTGTTTCCAGGCGAACATTCTCTGCTCGGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAAGCTCTTTTCCATGGAGACCATGGTAACAATATGGTATTCATTCAGCAGGCAGCTAATGCTGCCATAACTGGAGCTATTGGCTCCTCTGGTTATGCTTCACCTCCTGTTTCCAAAAAAAGGAAAGGTCAAGAACTCTACTTTGGATCGACGGCCAAGGACCTATCAACTCATAGACCAGTAGCATTTCAACAGGTGAACCCAATAATTTAA 1074 44.69 MIIPMPFSKNVAFVNVIRVYLHNQKMKLYLKKLSIVWDLNSMGEEDSAGAPPKKAQSDGAALSNSSSSDIPSKKLARQLDFTGYGGAPHPQSHSNSHSQSQAPLVSQNLQQAQPKPQPQMVAASIAPLAPHSSVRTVKSDSPMSRARPAVEAKDSTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCLNCYNNVENDAARREAVEATLERNPNAFRPKIASSPHGMRDNREEAGELLMLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSEERQALFHGDHGNNMVFIQQAANAAITGAIGSSGYASPPVSKKRKGQELYFGSTAKDLSTHRPVAFQQVNPII 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 11365188 11371839 - CmoCh12G012880.1 Cmo12g01288 393976
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo12g01288 357 SMART CXC_2 243 284 IPR033467 -
Cmo12g01288 357 SMART CXC_2 158 198 IPR033467 -
Cmo12g01288 357 MobiDBLite consensus disorder prediction 58 73 - -
Cmo12g01288 357 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 246 280 IPR005172 -
Cmo12g01288 357 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 160 195 IPR005172 -
Cmo12g01288 357 PANTHER TESMIN/TSO1-RELATED 67 120 IPR028307 -
Cmo12g01288 357 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 67 120 - -
Cmo12g01288 357 ProSiteProfiles CRC domain profile. 159 283 IPR005172 -
Cmo12g01288 357 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 98 354 - -
Cmo12g01288 357 PANTHER TESMIN/TSO1-RELATED 98 354 IPR028307 -
Cmo12g01288 357 MobiDBLite consensus disorder prediction 44 160 - -
Cmo12g01288 357 MobiDBLite consensus disorder prediction 88 118 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo05g01354 Cmo12g01288 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo12g01288 Cmo-Chr12:11365188 Cmo17g00212 Cmo-Chr17:1245799 1.33E-34 dispersed
Cmo10g00669 Cmo-Chr10:3059747 Cmo12g01288 Cmo-Chr12:11365188 5.74E-132 wgd
Cmo11g00626 Cmo-Chr11:2988636 Cmo12g01288 Cmo-Chr12:11365188 3.43E-102 wgd
Cmo12g01288 Cmo-Chr12:11365188 Cmo05g01354 Cmo-Chr5:10498359 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
10786 PF03638 TCR 1.60E-12 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo12g01288 - - csv:101211978 582.022