Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo14g02075 ATGCGTAATTCGATCCCACAGCCTTCTTCTCCCATCCGTGCGGTGGATAATTCGCCTCTTCTCGCGCACTCCGTCGCCGATGGCCTTTTCCGTTCGCGAGGGTTTATTCGCCGTTCGCCTCAACCTCTTCGCGGAGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCGAGAATCCTCCGTTCGTGTCCGCGAGAACGCCGCGGAGCAGCTGGAGGAGCGCCAGAGCGATTGGGCGTATTCAAAGCCGATTATCCTTTTGGACCTTCTGTGGAACTTGGCCTTCGTCGCCATTAGTTTCACTGTCATAGGGCTCAGCACGAGTGAAAAACCTTCAGTGCCGCTCAGGTTTTGGATCATTGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTAGCTACAGAGTATAAGCGGCGGCGCTCAACGAGAGAGCTAGTCGGATCGGACCGTAGCGGTGGCTGGACGAGCAGCGAGGATTCAAATTCGATATCTGGAAGCGATGGCGATGATTATGCGACCGAGCTCACTGTGAATGACGATGAACCGAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACCATGTTCTCTTTCATTTGGTGGCTGTTGGGCTTTTATTGGGTGACTGCTGGAGGCCAAGAATTGATAGATGATTCACCTCAGCTATACTGGCTTTGTATTACATTCCTTGCTTTCGATGTCGTATTTGTTCTGATTTGTGTTGCCATTGCGTGTCTTGTTGGTGTTGCAATTTGCTGCTGTCTGCCTTGCATAATTGCCATCTTGTATGCGGTTACCGATCAGGAAGGAGCTACTAAGGAAGAGATCGAACGCTTACCGAAGTACAAATTTAACAGAACGGGTGATGTCGAGAAAGTGAATGGTGATATTCAAGAATCTACCGGAGGAATGATGACTAAATGTGACACTGATGCACCGACAGAGCGTTTTCTTCGCTCGGAGGATTCTGAGTGTTGCATCTGCCTCTCTGCTTACGAAAACGGAACCGAGCTACGAGAACTTCCCTGTAACCACCATTTTCACTGCAACTGCATCGACAAATGGTTGCACATGAATGCTACCTGCCCTCTCTGCAAGTTCAACATCTTGACGCCCAACGGTTGCGGTAGCGAAGAAGTGTGA 1158 49.91 MRNSIPQPSSPIRAVDNSPLLAHSVADGLFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLRESSVRVRENAAEQLEERQSDWAYSKPIILLDLLWNLAFVAISFTVIGLSTSEKPSVPLRFWIIGYALQCIIHMSCVATEYKRRRSTRELVGSDRSGGWTSSEDSNSISGSDGDDYATELTVNDDEPSNLVKHIESANTMFSFIWWLLGFYWVTAGGQELIDDSPQLYWLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQEGATKEEIERLPKYKFNRTGDVEKVNGDIQESTGGMMTKCDTDAPTERFLRSEDSECCICLSAYENGTELRELPCNHHFHCNCIDKWLHMNATCPLCKFNILTPNGCGSEEV 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 15111582 15114621 + CmoCh14G020750.1 Cmo14g02075 397341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo14g02075 385 CDD RING-H2_RNF111_like 329 373 - -
Cmo14g02075 385 MobiDBLite consensus disorder prediction 153 172 - -
Cmo14g02075 385 ProSiteProfiles Zinc finger RING-type profile. 330 371 IPR001841 -
Cmo14g02075 385 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 377 - -
Cmo14g02075 385 PANTHER TARGET OF ERK KINASE MPK-1 1 377 - -
Cmo14g02075 385 SMART ring_2 330 370 IPR001841 -
Cmo14g02075 385 Pfam Ring finger domain 329 371 IPR001841 -
Cmo14g02075 385 MobiDBLite consensus disorder prediction 151 172 - -
Cmo14g02075 385 SUPERFAMILY RING/U-box 320 377 - -
Cmo14g02075 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 376 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01129 Cmo14g02075 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02205 Cmo-Chr4:16435498 Cmo14g02075 Cmo-Chr14:15111582 3.18E-100 dispersed
Cmo06g00747 Cmo-Chr6:3884619 Cmo14g02075 Cmo-Chr14:15111582 6.93E-45 dispersed
Cmo11g00101 Cmo-Chr11:539352 Cmo14g02075 Cmo-Chr14:15111582 1.53E-12 dispersed
Cmo12g00254 Cmo-Chr12:1650074 Cmo14g02075 Cmo-Chr14:15111582 8.68E-51 dispersed
Cmo14g00491 Cmo-Chr14:2435056 Cmo14g02075 Cmo-Chr14:15111582 7.90E-88 dispersed
Cmo14g02075 Cmo-Chr14:15111582 Cmo16g01058 Cmo-Chr16:7427147 3.34E-142 dispersed
Cmo14g02075 Cmo-Chr14:15111582 Cmo06g01129 Cmo-Chr6:8677999 3.56E-63 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo14g02075 - - csv:101205399 706.057