Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo15g01410 | ATGGGTTTGCTTCGGTTTTTTAGAGTGAAGAGGAAATCGAAAGTTGCTGATAAAAAAACCGTTCTTGATGCTGAAATTCAGCCTGGTTTTGGTGCTAGGAAGTTCCGGTGGACTGAAATAGAGGCTTTTACTAAGAATTTCTCCACTGTTGTCGGCTCCGGCGGCTTCAGTAACGTCTATCTTGCTCGGACGTCGCCGGGGATGCCGGCGGCGGTTAAGATTTTGGGTGCTAGTGAGCGGCTCAACCGGATGTTCCGGCAGGAATTGGACATTCTTCTGCAGCTCCGACACCGGAATATTGTCACTTTCCTTGGCTTTTGCGATGAACGAGATGAAGGAGCTTTGGTCTTCGAATATGTCTCCAATGGGAGCTTGCAAGAGAAGCTTCACAGCCGGCTGCCGGCGGCGAAGACAGCGGTGCCGGTTCTTCCATGGAAAATCCGGTTAGCCATTGCCTTTCAGTTAGCTCAAGCAATCGAATACCTCCATGAAAAATGCAGTCTACAAATCGTTCATGGCGATATAAAATCATCGAACATTTTACTGGACGAACGCTTCAATTGCAAACTCTGTGATTTTGGGTCGGCGAAAATGGGATTCTCATCGGCAGTAGCGAATCCGTCGTCGTCGTCATCGCCGTCGAGCCCCTTCAGAGCGAAGCAATGGATGATGGGATCTCCCGGTTACACAGATCCCCAATACTTAAGAACCGGAATCGCCTCAAAGAAGAACGACATTTACAGTTTCGGCGTGGTAGTTTTAGAGCTAATCACCGGAAAAGAGGCTTTCTGCTCGGAGAAGGGTCTGATTCTGACTTCAATTTTACCTCCAGCAGTTCGCGACGGCGAAGGAATTAAACCGTCGGCGGTGGCGGAACTGGTGGATCCGCGGCTCCGGGGAGAATTCGACAGCAATGAAGCCGGAGCGTTGCTTTCAATCGCAGCCGCCTGCTTAGCGCAGCCGCCCGCACCGAGGCCGGTGATCGGAGGCGTGCTGCAGATGATGACGGAGAAGATCGGGAATGTGAGCGACGGGGTATGGGCGGGGAAACGTGGCAGTAAATTATTGGATATGGGGAGATGGTAA | 1086 | 51.38 | MGLLRFFRVKRKSKVADKKTVLDAEIQPGFGARKFRWTEIEAFTKNFSTVVGSGGFSNVYLARTSPGMPAAVKILGASERLNRMFRQELDILLQLRHRNIVTFLGFCDERDEGALVFEYVSNGSLQEKLHSRLPAAKTAVPVLPWKIRLAIAFQLAQAIEYLHEKCSLQIVHGDIKSSNILLDERFNCKLCDFGSAKMGFSSAVANPSSSSSPSSPFRAKQWMMGSPGYTDPQYLRTGIASKKNDIYSFGVVVLELITGKEAFCSEKGLILTSILPPAVRDGEGIKPSAVAELVDPRLRGEFDSNEAGALLSIAAACLAQPPAPRPVIGGVLQMMTEKIGNVSDGVWAGKRGSKLLDMGRW | 361 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 15 | 9612513 | 9614500 | + | CmoCh15G014100.1 | Cmo15g01410 | 398918 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo15g01410 | 361 | CDD | STKc_IRAK | 51 | 337 | - | - | |
| Cmo15g01410 | 361 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 170 | 182 | IPR008271 | GO:0004672|GO:0006468 | |
| Cmo15g01410 | 361 | ProSitePatterns | Protein kinases ATP-binding region signature. | 51 | 73 | IPR017441 | GO:0005524 | |
| Cmo15g01410 | 361 | PANTHER | - | 19 | 343 | - | - | |
| Cmo15g01410 | 361 | Gene3D | Phosphorylase Kinase; domain 1 | 8 | 119 | - | - | |
| Cmo15g01410 | 361 | ProSiteProfiles | Protein kinase domain profile. | 45 | 339 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo15g01410 | 361 | Pfam | Protein kinase domain | 49 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo15g01410 | 361 | SMART | serkin_6 | 45 | 335 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Cmo15g01410 | 361 | PANTHER | OS07G0668900 PROTEIN | 19 | 343 | - | - | |
| Cmo15g01410 | 361 | SUPERFAMILY | Protein kinase-like (PK-like) | 31 | 335 | IPR011009 | - | |
| Cmo15g01410 | 361 | Gene3D | Transferase(Phosphotransferase) domain 1 | 120 | 345 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cmo02g00976 | Cmo15g01410 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo15g01410 | Cmo-Chr15:9612513 | Cmo04g00522 | Cmo-Chr4:2593644 | 9.34E-57 | dispersed | |
| Cmo15g01410 | Cmo-Chr15:9612513 | Cmo02g00976 | Cmo-Chr2:6020389 | 0 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 74933 | PF00069 | Pkinase | 5.50E-40 | CL0016 | Cmo | PK |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo15g01410 | - | - | cmax:111468884 | 669.848 |