Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00479 ATGAGATCGCCATTGTTGACGCCTCTTCTGATCTCTTTCTTTTTCTTGTTCTTTTCTTTCTCTCTTGCTCTCGTGCCTGCTAACGAGACCTTCAAGTTCGTCAATGAAGGCGAGTTCGGTGATTTCGCCGTCGAGTACGGCGGCACCTACAGAGTTCTCAGCATCTTCAGATTTCCATTTCAGTTAGCTTTCTACAACACGACGCCGAACGCTTACACGCTTGCTCTTAGAATTTCGATTCGTCGCTCCGAATCGGCGATACGGTGGGTTTGGGAGGCCAATCGCGGCCGTCCGGTGCGCGAAAATGCTACATTCTCTCTCTCCGCCAACGGAAACCTAGTTCTCGCTGAAGCCGACGGCACTGTTGTATGGCAATCGAACACAGCCAACAAAGGCGTTGTTGGATTCGAATTGCTTCCGAGTGGCAACATGGTGTTGTTCGACTCCAATGGCAAATTCCTCTGGCAGAGCTTCGATTCGCCGACGGACACACTCCTAGTCGGCCAATCGCTCCGTCTCGGCGGGCCAATGAAGCTAGTAAGCCGCGCATCGGAGGAAATGAACGTCAATGGACCTTACAGCCTTGTAATGGAACGAAAAGTCCTATCTCTGTACTACAAAAGCCCTAACTCTCCGAAACCGATGCGGTACTACTCATCCACAGACATGCTCTCAGTCCGGAAAGGCGTTCTCGCAAATATCACACTAAACGCCGCCGTAGATCCAGATCAAGGATTCGCCACCGAATTAACACTGAACTACGACACCGGCTCGACTGAGAGCGGCGGTCCAATTCTAACCCGGCCGAAGTACAACAGCACACTAACATTCCTCCGATTAGGAATCGACGGCAACCTCCGCCTGATCACATACAACGACAAAGTCGATTGGGGCCCGTCGGAGATTTCGTTCACACTCTTCGATAGGGATTCAAGTTGGGAGAACGAATGCCAGTGGCCAGAGCGGTGCGGACAGTTCGGGTTGTGCGAGGACAACCAGTGCGTAGCCTGTCCAACAGAGAACGGACTGGCGGGATGGAGCAAGAGCTGCGCGCCGAAGAAGGTAAGTTCCTGCGATCCCAAAAGCTTCCATTACTATAAACTAGTCGGTGTGGATCATTTCTTGACAAAGTACAACAAAGGAGAAGGGCCAATGGGACAGAAGGAGTGTGAGAAGAAGTGCAATTTGGATTGCAAATGTTTGGGATATTTTTACCAAACCAAAGGGTCGCTTTGTTGGGTTGCAAATGAGCTGAAAACTTTGATAAAAGTGGCCAATTCCACTCATTTGGGCTTCATCAAAACACCCAATAAGTAG 1317 50.34 MRSPLLTPLLISFFFLFFSFSLALVPANETFKFVNEGEFGDFAVEYGGTYRVLSIFRFPFQLAFYNTTPNAYTLALRISIRRSESAIRWVWEANRGRPVRENATFSLSANGNLVLAEADGTVVWQSNTANKGVVGFELLPSGNMVLFDSNGKFLWQSFDSPTDTLLVGQSLRLGGPMKLVSRASEEMNVNGPYSLVMERKVLSLYYKSPNSPKPMRYYSSTDMLSVRKGVLANITLNAAVDPDQGFATELTLNYDTGSTESGGPILTRPKYNSTLTFLRLGIDGNLRLITYNDKVDWGPSEISFTLFDRDSSWENECQWPERCGQFGLCEDNQCVACPTENGLAGWSKSCAPKKVSSCDPKSFHYYKLVGVDHFLTKYNKGEGPMGQKECEKKCNLDCKCLGYFYQTKGSLCWVANELKTLIKVANSTHLGFIKTPNK 438
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 2292896 2294212 + CmoCh16G004790.1 Cmo16g00479 399514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00479 438 PIRSF SLG 1 438 IPR035446 -
Cmo16g00479 438 Gene3D - 59 159 IPR036426 -
Cmo16g00479 438 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 13 438 - -
Cmo16g00479 438 SMART blect_4 44 161 IPR001480 -
Cmo16g00479 438 CDD PAN_AP_plant 356 436 - -
Cmo16g00479 438 ProSiteProfiles Bulb-type lectin domain profile. 41 159 IPR001480 -
Cmo16g00479 438 CDD B_lectin 44 161 IPR001480 -
Cmo16g00479 438 PANTHER - 13 438 - -
Cmo16g00479 438 Pfam D-mannose binding lectin 90 173 IPR001480 -
Cmo16g00479 438 SUPERFAMILY alpha-D-mannose-specific plant lectins 70 208 IPR036426 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo04g00712 Cmo16g00479 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo16g00479 Cmo-Chr16:2292896 Cmo06g00272 Cmo-Chr6:1374638 1.72E-33 dispersed
Cmo16g00478 Cmo-Chr16:2288991 Cmo16g00479 Cmo-Chr16:2292896 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00479 - - csv:101212696 716.842