Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00630 ATGGAGGATTGGGATTTGCAAGCAATTGTAAAAGGATGCAACGGATCAATTACTCCTTCAAGAACAGCAACGCTCATGGAAGATCCAAATTTGGTCTCTTTTTTGATCGAAAAAGATGAACTTTTAAGTTCTTGTTCAGTGTATGATGAGTTTGAAGGGTTGTTTGGGAGCTCTGATGACTCTGCCTCTGCCTCTGCCTCTGCCGCCGCCATTTCTGGTCTTCTCAGAGAGCTTAAGGAACCGGAAAAGCTTCATCGGAAGAGCCAAATCGCTGCAACTAAACAGAAACAGAGCAAGAAAAGTCGGGAAAACAGAGTAGTGAAAGAGGTGAAAGCAGAGGGGGTGTGTTCGGATTCATGGGGATGGCGGAAATATGGACAGAAACCGATTAAAGGGTCGCCATATCCGAGAAGCTATTATCGATGTAGCTCCTCCAAAGGATGCTCTGCTAGAAAGCAAGTTGAACGGAGCCTCTCCGATCCTGGCGCCTTTGTCGTCACCTACTCGGCTGAGCACAACCACGCTGAGCCTACTCGCCGTAACGCGCTTGCCGGAACCACCAGGAAGAAGTTTCCGGCGCCGGAAAATCCGAGGTTGGACGTGATTCTGTCGCCTAGTAATTCTATGTCCGTGGCGTCCGTTGAAGAAGAACAGCCGATGGAGGGAGTTGCAGAGGGGGGAGTTATTATGGATTTGCCATTCGAATTCTTTTCTGGTTTGGAGGATTTTCTTTTCGAATGA 741 48.18 MEDWDLQAIVKGCNGSITPSRTATLMEDPNLVSFLIEKDELLSSCSVYDEFEGLFGSSDDSASASASAAAISGLLRELKEPEKLHRKSQIAATKQKQSKKSRENRVVKEVKAEGVCSDSWGWRKYGQKPIKGSPYPRSYYRCSSSKGCSARKQVERSLSDPGAFVVTYSAEHNHAEPTRRNALAGTTRKKFPAPENPRLDVILSPSNSMSVASVEEEQPMEGVAEGGVIMDLPFEFFSGLEDFLFE 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 3100583 3101717 - CmoCh16G006300.1 Cmo16g00630 399665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00630 246 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 3 210 - -
Cmo16g00630 246 Gene3D WRKY domain 93 178 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00630 246 MobiDBLite consensus disorder prediction 85 105 - -
Cmo16g00630 246 Pfam WRKY DNA -binding domain 118 174 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00630 246 ProSiteProfiles WRKY domain profile. 111 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00630 246 SUPERFAMILY WRKY DNA-binding domain 114 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cmo16g00630 246 SMART WRKY_cls 116 176 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cmo16g00630 246 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 3 210 IPR044810 GO:0003700
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01102 Cmo16g00630 CCT
Cmo15g01124 Cmo16g00630 CCT
Cmo02g01102 Cmo16g00630 ECH
Cmo15g01124 Cmo16g00630 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo15g01124 Cmo-Chr15:7806671 Cmo16g00630 Cmo-Chr16:3100583 3.05E-39 dispersed
Cmo16g00630 Cmo-Chr16:3100583 Cmo18g00508 Cmo-Chr18:3605353 5.66E-37 dispersed
Cmo16g00630 Cmo-Chr16:3100583 Cmo04g00768 Cmo-Chr4:3846274 1.49E-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11282 PF03106 WRKY 4.10E-25 CL0274 Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00630 K13426 K13425 cpep:111810405 426.402