Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g00894 ATGACGAAGGTATCTCCCAAGAAGCCTCAGCTTCCGGCGCCTTTTCCGCCCACACTCAACCAACTCCCAGATTTGGATCTGCATTACAGGCCTGGTTCCAGTCGGCCTACGCGGCGGAGAATCCGAAGTCCAGCCCGTGTTAGAAGAGTTGTTGCTCCCCTTGGGAAGCGGAGCCGGCCTGAGACGCCCTTGCTCAAGTGGAAAATCGACGACGCGGGGAGTGGAGCTAATGGAGTTCAGCAGGAGGAAGATGAGAAGAGATTGCCTCTGGAAAGCAGCCAGAGAGGTCGCATTCGAGGTTGTAAAGGAAGAAAAGTCGTTGTTTCGGCCAGGAAGCTCGCGGCTGGAATTTGGAGATTGCTGCTGCAGGAGGCGGCCGCTAGTGAAGGGAGGAATGGTGGCCAGGGAAGGACGGAGGATCTCGTAGGGTTTCAGACAAATTTGCATTTAAAGGTTCATCACCAATCTCATTGTTATTCTAACTACAAAAACATTGATTTTGATTTTGGAGAGCCTCGCACGGGTCATTTGGCTCCAGCTCTCCATCCTGATGAGAAGATAGCATTTAATTCTGAAATGAATGATCTATTACATAGTCCCCATTCTGTCTCTGATTCGAGAAATCGACTATTGTGCAAGTTTGAGCCCTCATTTCGATATTCGAACTCAGCAATGGAGGGGGCAACCAAGTGGGAACCTGCATGCTTGAAAACTCCAGTTGAGGCACGTCAAATTTACAACCAAATGAGACTTCTTGATCAGCATGGTGCTGTTTTGGCCCTTTCTGCGCTTGAATCTGAACTAGAGCAAGCCCACTTGCAGATCGAGGAACTTCAAGCTGAGCGTAATGCTTCGAAAAAGAAGCTCGAATACTTCTTGAGGAAAGTTGCTGAAGAAAAAACCTTATGGCGGAGCAGAGAGCATGAGAAAATAAGGGCATGTGTTGATGATATAAAGGCTGAGTTGAACAGAGAAAAGAAAACCCGACAAAGGGTGGAAATGATCAATTCAAAATTGGTAAATGAGTTGGCCGATGCTAAGCTATCTGTAAAGCGGTTTATGCAAGACTATGAAAAAGAAAGAAAGGAAAGATCCTTGGTTGAGGAAGTATGTGATGAACTTGCAAAGGAAGTTGGTGAAGACAAAGCAAGAATAGAAGCTCTGAAGAGAGAATCCATGAAATTGAGAGATGAAGCAGATGAAGAACGGAGAATGTTACAGATGGCGGAGGTATGGCGCGAAGAACGTGTTCAAATGAAGCTGGTTGATGCCAAGGTGGCACTTGAAGAGAAATACTCACAGATGCGTAATCTAGTAGCAGACCTTGAAGACTTCTTAAGGTTGAAAAGTGAAACCCCAGATGTATCAGAGATGAAAAAAGCTTTGCTACTTAGAGAGGCTGCCGCCTCTGTTAATATTCAAGATGTCACAGAATTTGTTTATGAACCTTCAAACCCAGATGATATCTTCTCTGTGTTTGAAGATGTCAATTTTGGAGAATCGAATGAGAGGGAAATTGGACAGTGCGATGCTTACAGCCCGCCTTGTCACGCTTCTAAAGTCGAGACTGCGAGTCTAGAAGCTAATGTTACCGATAGGATCGGCATTCAGAGACATACGGATTCCTTTGTTGCTCGTAACAGCGGTATAGAAGAAGATGAGAGTGGCTGGGAAACTGTGAGTCATTTAGAGGATCAGGGCTCAAGCAATTCCCCAGAACAGAGTGTTGCGTCTATCAAAAAGAATCATCGGGAGAGTAATGCTTCCGTGAGTGGGATAGAATGGGAAGGAAATGGAGGTGGAGACTCACCCCTTACTGAAATCAGTGAAGTCTGCTCAGTTCCATCAAAGCAATTAAAGAAGATATCATCCATTGCACGGCTTTGGAAATCGTGCTCAAACAATGAAGGATACAAACTAATCTCCCTTGAGGGCATAAACGCCAGGCTCTCAAATGGAAGATTATCGAGTGCAAGTATCTTTTCGGCAGATGGGGGCTCGGTGAGAAGCGGGATTAGTCCTCCAGAATTGGCTGGACAGTGGAGCTCCCCTGACTCAGGCAATGGTCACGCGACACGAGGGAAGAAAGGATGCATTCCTCGCAACACGATCAAAGGTAGTTTAAAGGCGAAGCTGTTGGAGGCAAGGATGGAAAGCCATAAGGTCCAGTTGCGCCAGGTCCTGAAGCATAAGATCTAG 2199 46.34 MTKVSPKKPQLPAPFPPTLNQLPDLDLHYRPGSSRPTRRRIRSPARVRRVVAPLGKRSRPETPLLKWKIDDAGSGANGVQQEEDEKRLPLESSQRGRIRGCKGRKVVVSARKLAAGIWRLLLQEAAASEGRNGGQGRTEDLVGFQTNLHLKVHHQSHCYSNYKNIDFDFGEPRTGHLAPALHPDEKIAFNSEMNDLLHSPHSVSDSRNRLLCKFEPSFRYSNSAMEGATKWEPACLKTPVEARQIYNQMRLLDQHGAVLALSALESELEQAHLQIEELQAERNASKKKLEYFLRKVAEEKTLWRSREHEKIRACVDDIKAELNREKKTRQRVEMINSKLVNELADAKLSVKRFMQDYEKERKERSLVEEVCDELAKEVGEDKARIEALKRESMKLRDEADEERRMLQMAEVWREERVQMKLVDAKVALEEKYSQMRNLVADLEDFLRLKSETPDVSEMKKALLLREAAASVNIQDVTEFVYEPSNPDDIFSVFEDVNFGESNEREIGQCDAYSPPCHASKVETASLEANVTDRIGIQRHTDSFVARNSGIEEDESGWETVSHLEDQGSSNSPEQSVASIKKNHRESNASVSGIEWEGNGGGDSPLTEISEVCSVPSKQLKKISSIARLWKSCSNNEGYKLISLEGINARLSNGRLSSASIFSADGGSVRSGISPPELAGQWSSPDSGNGHATRGKKGCIPRNTIKGSLKAKLLEARMESHKVQLRQVLKHKI 732
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5138988 5143020 + CmoCh16G008940.1 Cmo16g00894 399929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g00894 732 MobiDBLite consensus disorder prediction 545 602 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 561 593 - -
Cmo16g00894 732 PANTHER GB|AAF24581.1 8 732 IPR043424 -
Cmo16g00894 732 Coils Coil 343 405 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 62 91 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 677 697 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 1 44 - -
Cmo16g00894 732 PANTHER ACTIN CYTOSKELETON-REGULATORY COMPLEX PAN-LIKE PROTEIN 8 732 - -
Cmo16g00894 732 Coils Coil 261 295 - -
Cmo16g00894 732 MobiDBLite consensus disorder prediction 545 560 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g01183 Cmo16g00894 CCT
Cmo09g00951 Cmo16g00894 CCT
Cmo09g00951 Cmo16g00894 ECH
Cmo01g01183 Cmo16g00894 ECH
Cmo06g00920 Cmo16g00894 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01353 Cmo-Chr2:8058039 Cmo16g00894 Cmo-Chr16:5138988 2.44E-40 dispersed
Cmo09g00951 Cmo-Chr9:4999968 Cmo16g00894 Cmo-Chr16:5138988 0 dispersed
Cmo16g00894 Cmo-Chr16:5138988 Cmo20g00174 Cmo-Chr20:873837 1.96E-18 dispersed
Cmo01g01183 Cmo-Chr1:9618144 Cmo16g00894 Cmo-Chr16:5138988 9.54E-176 wgd
Cmo16g00894 Cmo-Chr16:5138988 Cmo04g01033 Cmo-Chr4:5169346 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g00894 - - csv:101221647 1176.39