Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01058 ATGGCATCTTCAAGGTCTCCGAATGGATCGTCTGACGATATCGTTGATACCTCCCCCTTGATGGGGAATTCGAATCGGTCGCTTGATGAAACGCATTCGGGTCGGCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACAGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTGAGCCGCAACGAGTCTCCTACAATGCCTTTGAGGTTGTGGATTGTGGGGTATGCGTTTCAATGCGTTCTCCATATGGTGTGTGTTATTGTGGAGTATCGTCGCCGCCAGCAGCGGCGCTATTCAGACTTCAATTCGATGGATGAGGGAAATTCTGCACGCGGGCTTTCCGGTTTGGGGTCGAGAGGGAACTCGAGTCATTATGTATCATTGGCGCACCTGGATGATAACGACACCAGTGTAGCAAAGCACCTGGAATCTGCAAATACTATGTTTTCCTTCATCTGGTGGATCATTGGATTCTACTGGGTATCTGCAGGAGGCCAATCTTTAGCACACGTCTCCCCTCTGCTTTACTGGTTATGCATCATATTCTTGGGTTTTGATGTCTTCTTTGTGGTCTTCTGTGTTGCTTTGGCATGTATCATTGGAATCGCTGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTACATTCAGAAAGGTTGATGATGCAGAGAAATTCTCCGCTGATGTACAGGAACCTCTTGGTGGCATAATGATCGAATGTAGTACAGATTCACCCATTGAACGTGCCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGAGGATGGCGTCGAGCTACGAGAGCTTCCGTGTGGTCACCATTTCCACTGTGCCTGTGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAGTAGCAATCTTGCTCAAGAGGAAGTTTGA 1152 48.44 MASSRSPNGSSDDIVDTSPLMGNSNRSLDETHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPTMPLRLWIVGYAFQCVLHMVCVIVEYRRRQQRRYSDFNSMDEGNSARGLSGLGSRGNSSHYVSLAHLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMIECSTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 7427147 7434657 - CmoCh16G010580.1 Cmo16g01058 400093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01058 383 MobiDBLite consensus disorder prediction 1 35 - -
Cmo16g01058 383 CDD RING-H2_RNF111_like 327 371 - -
Cmo16g01058 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 382 IPR013083 -
Cmo16g01058 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Cmo16g01058 383 SMART ring_2 328 368 IPR001841 -
Cmo16g01058 383 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 383 - -
Cmo16g01058 383 MobiDBLite consensus disorder prediction 1 28 - -
Cmo16g01058 383 Pfam Ring finger domain 327 369 IPR001841 -
Cmo16g01058 383 PANTHER TARGET OF ERK KINASE MPK-1 6 383 - -
Cmo16g01058 383 SUPERFAMILY RING/U-box 318 375 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo06g01129 Cmo16g01058 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo06g01129 Cmo-Chr6:8677999 Cmo16g01058 Cmo-Chr16:7427147 5.07E-43 dispersed
Cmo14g02075 Cmo-Chr14:15111582 Cmo16g01058 Cmo-Chr16:7427147 3.34E-142 dispersed
Cmo15g01028 Cmo-Chr15:6128617 Cmo16g01058 Cmo-Chr16:7427147 7.64E-90 dispersed
Cmo16g01058 Cmo-Chr16:7427147 Cmo06g00747 Cmo-Chr6:3884619 2.53E-61 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01058 - - csv:101209228 685.641