Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo16g01058 | ATGGCATCTTCAAGGTCTCCGAATGGATCGTCTGACGATATCGTTGATACCTCCCCCTTGATGGGGAATTCGAATCGGTCGCTTGATGAAACGCATTCGGGTCGGCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCGGCGAGGTTTCTGAGGCAGGCGAGTAGTCGGAGGACGATGCGTGAGCCGTCTATGTTGGTCCGAGAGACAGCTGCGGAGCAATTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCGGTTGTCATCCTTGACATCGTCTGGAATTTCGCTTTTGTTGTTGTTGCTGCTACCGTTTTGGTTCTGAGCCGCAACGAGTCTCCTACAATGCCTTTGAGGTTGTGGATTGTGGGGTATGCGTTTCAATGCGTTCTCCATATGGTGTGTGTTATTGTGGAGTATCGTCGCCGCCAGCAGCGGCGCTATTCAGACTTCAATTCGATGGATGAGGGAAATTCTGCACGCGGGCTTTCCGGTTTGGGGTCGAGAGGGAACTCGAGTCATTATGTATCATTGGCGCACCTGGATGATAACGACACCAGTGTAGCAAAGCACCTGGAATCTGCAAATACTATGTTTTCCTTCATCTGGTGGATCATTGGATTCTACTGGGTATCTGCAGGAGGCCAATCTTTAGCACACGTCTCCCCTCTGCTTTACTGGTTATGCATCATATTCTTGGGTTTTGATGTCTTCTTTGTGGTCTTCTGTGTTGCTTTGGCATGTATCATTGGAATCGCTGTTTGCTGTTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGACCAGGAAGGAGCAACCAAAGAAGATGTTGAACAGTTGTCAAAATTTACATTCAGAAAGGTTGATGATGCAGAGAAATTCTCCGCTGATGTACAGGAACCTCTTGGTGGCATAATGATCGAATGTAGTACAGATTCACCCATTGAACGTGCCCTCTCACAGGAGGATGCGGAGTGCTGTATCTGCCTTTCTGCATATGAGGATGGCGTCGAGCTACGAGAGCTTCCGTGTGGTCACCATTTCCACTGTGCCTGTGTCGATAAGTGGCTGTATATTAATGCTACCTGTCCTCTCTGCAAGTACAACATCCTGAAAAGTAGCAATCTTGCTCAAGAGGAAGTTTGA | 1152 | 48.44 | MASSRSPNGSSDDIVDTSPLMGNSNRSLDETHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAATVLVLSRNESPTMPLRLWIVGYAFQCVLHMVCVIVEYRRRQQRRYSDFNSMDEGNSARGLSGLGSRGNSSHYVSLAHLDDNDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHVSPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFTFRKVDDAEKFSADVQEPLGGIMIECSTDSPIERALSQEDAECCICLSAYEDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLAQEEV | 383 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
16 | 7427147 | 7434657 | - | CmoCh16G010580.1 | Cmo16g01058 | 400093 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo16g01058 | 383 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cmo16g01058 | 383 | CDD | RING-H2_RNF111_like | 327 | 371 | - | - | |
Cmo16g01058 | 383 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 313 | 382 | IPR013083 | - | |
Cmo16g01058 | 383 | ProSiteProfiles | Zinc finger RING-type profile. | 328 | 369 | IPR001841 | - | |
Cmo16g01058 | 383 | SMART | ring_2 | 328 | 368 | IPR001841 | - | |
Cmo16g01058 | 383 | PANTHER | TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED | 6 | 383 | - | - | |
Cmo16g01058 | 383 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cmo16g01058 | 383 | Pfam | Ring finger domain | 327 | 369 | IPR001841 | - | |
Cmo16g01058 | 383 | PANTHER | TARGET OF ERK KINASE MPK-1 | 6 | 383 | - | - | |
Cmo16g01058 | 383 | SUPERFAMILY | RING/U-box | 318 | 375 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo06g01129 | Cmo16g01058 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo06g01129 | Cmo-Chr6:8677999 | Cmo16g01058 | Cmo-Chr16:7427147 | 5.07E-43 | dispersed | |
Cmo14g02075 | Cmo-Chr14:15111582 | Cmo16g01058 | Cmo-Chr16:7427147 | 3.34E-142 | dispersed | |
Cmo15g01028 | Cmo-Chr15:6128617 | Cmo16g01058 | Cmo-Chr16:7427147 | 7.64E-90 | dispersed | |
Cmo16g01058 | Cmo-Chr16:7427147 | Cmo06g00747 | Cmo-Chr6:3884619 | 2.53E-61 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo16g01058 | - | - | csv:101209228 | 685.641 |