Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo16g01203 ATGGATTCACGAGAGAGGTCGATGCCTTCTGTTCATCAACATCACCAACAATCAACTCCACCAAACAGGATGATGGGCAACGCTTCCTATTCCACAAATTTACCCAATACCAACAATTCTTCCCAAATGATCAACCCCAATTCCGCCGCTGCTCAAATCATGTCCTCCGCCTCCCGATTTCCCTTCAACTCCATGATGGGGTCCGCTTCTAAGCCCTCCGACTCTCCCAATACGGCTTCTTATGATGGATCGCATTCCGAATTGCGGACTGGTGGGTTTAACATTGATTCCGGGAAGAAGAAGCGAGGCCGACCCAGAAAGTATTCCCCTGATGGGAATATCGCCTTGGGTTTAGCGCCAACAACCATCACTAATTCCGCCGTTCCCGGCGATTCTTCCGGCATGAACTCCTCGGATCCTCGCCCTAAGAAGAACAGAGGACGGCCTCCCGGTACAGGGAAGAAGCAAATGGATGCTTTGGGGACTGGCGGTGTTGGCTTTACTCCGCATGTCATTCTGGTGAATCCAGGAGAGGATATTGCCTCAAAAGTTATGTCATTTTCACAGCAGGGGCCGCGAACCATTTGTATTCTCTCTGCCCATGGTGCTGTTTGCAATGTTACCCTTCACCAACCCGCAGCTGGTAGTGTGACATATGAGGGCCGCTACGAAATCATCTCTCTATCAGGTTCCTTCTTGATTTCCGACAATAATGGTAATCGAAGTCGAACCGGTGGTTTAAGTGTGTCTCTAGCAAGTGCAGATGGTCAAGTTCTTGGTGGAGTGACCAACATGCTAACAGCAGCATCTACAGTTCAGGTCATAGTCGGTAGCTTTCTCGTCGATGGGAAAAAGCTAGGCGATAATATACAGAAATCTGGGCCATCTTCGACATCACCCAATATGTTAAACTTTAATACACCCGTGGCAGCAGGCTGTCCGTCTGAAGGCGCTTCAAATAACTCATCCGACGACAATGGTGGAAGCCCTTTAAGCCGGGGGCCGGGAATGTACACCAACGCCAACCAACCAATTCATAATATGCAGATGTATCAATTATGGGGTAGTCGAAATCAATAA 1080 48.89 MDSRERSMPSVHQHHQQSTPPNRMMGNASYSTNLPNTNNSSQMINPNSAAAQIMSSASRFPFNSMMGSASKPSDSPNTASYDGSHSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLAPTTITNSAVPGDSSGMNSSDPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVNPGEDIASKVMSFSQQGPRTICILSAHGAVCNVTLHQPAAGSVTYEGRYEIISLSGSFLISDNNGNRSRTGGLSVSLASADGQVLGGVTNMLTAASTVQVIVGSFLVDGKKLGDNIQKSGPSSTSPNMLNFNTPVAAGCPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQLWGSRNQ 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 8608087 8615957 - CmoCh16G012030.1 Cmo16g01203 400238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo16g01203 359 MobiDBLite consensus disorder prediction 118 140 - -
Cmo16g01203 359 MobiDBLite consensus disorder prediction 64 161 - -
Cmo16g01203 359 MobiDBLite consensus disorder prediction 1 42 - -
Cmo16g01203 359 CDD DUF296 168 279 IPR005175 -
Cmo16g01203 359 Gene3D - 169 293 - -
Cmo16g01203 359 MobiDBLite consensus disorder prediction 291 342 - -
Cmo16g01203 359 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 279 IPR005175 -
Cmo16g01203 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 81 355 IPR039605 GO:0003680
Cmo16g01203 359 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 280 - -
Cmo16g01203 359 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 81 355 - -
Cmo16g01203 359 ProSiteProfiles PPC domain profile profile. 163 301 IPR005175 -
Cmo16g01203 359 SMART AT_hook_2 99 111 IPR017956 GO:0003677
Cmo16g01203 359 SMART AT_hook_2 143 155 IPR017956 GO:0003677
Cmo16g01203 359 MobiDBLite consensus disorder prediction 64 91 - -
Cmo16g01203 359 MobiDBLite consensus disorder prediction 12 42 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01203 Cmo19g00256 CCT
Cmo06g00662 Cmo16g01203 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo05g00982 Cmo-Chr5:7907590 Cmo16g01203 Cmo-Chr16:8608087 3.22E-72 dispersed
Cmo12g00629 Cmo-Chr12:3929478 Cmo16g01203 Cmo-Chr16:8608087 1.43E-71 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo17g00404 Cmo-Chr17:2679899 2.15E-58 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo19g00256 Cmo-Chr19:1864916 1.96E-86 wgd
Cmo16g01203 Cmo-Chr16:8608087 Cmo02g01652 Cmo-Chr2:9527908 1.98E-115 wgd
Cmo16g01203 Cmo-Chr16:8608087 Cmo06g00662 Cmo-Chr6:3334907 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo16g01203 - - csv:101204243 629.787