Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo17g00626 ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGCCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGCCTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAATCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTTCTGCACCCCCTCCCCCACCTGGTACTCCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGACGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCACTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGGTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGGTGCAAGTTCAGGATACACTGCCCCTGAGGTCACCATGTCCGGCCAATATACGTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGACTATATCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG 2145 45.64 MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPPQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLMPSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGSAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDGASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 6571058 6577437 + CmoCh17G006260.1 Cmo17g00626 401009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo17g00626 714 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cmo17g00626 714 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672|GO:0006468
Cmo17g00626 714 SUPERFAMILY L domain-like 28 234 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 260 281 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 692 714 - -
Cmo17g00626 714 CDD STKc_IRAK 415 684 - -
Cmo17g00626 714 Gene3D Ribonuclease Inhibitor 175 247 IPR032675 -
Cmo17g00626 714 Pfam Leucine Rich repeat 97 114 IPR001611 GO:0005515
Cmo17g00626 714 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515
Cmo17g00626 714 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 19 708 - -
Cmo17g00626 714 MobiDBLite consensus disorder prediction 239 283 - -
Cmo17g00626 714 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524
Cmo17g00626 714 Gene3D Phosphorylase Kinase; domain 1 374 486 - -
Cmo17g00626 714 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cmo17g00626 714 SUPERFAMILY Protein kinase-like (PK-like) 391 681 IPR011009 -
Cmo17g00626 714 Gene3D Ribonuclease Inhibitor 30 174 IPR032675 -
Cmo17g00626 714 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmo17g00626 714 PANTHER OS01G0253100 PROTEIN 19 708 IPR045271 GO:0004714|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo01g00024 Cmo17g00626 CCT
Cmo08g00808 Cmo17g00626 CST
Cmo08g00578 Cmo17g00626 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo01g00024 Cmo-Chr1:83641 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo15g01506 Cmo-Chr15:10197461 Cmo17g00626 Cmo-Chr17:6571058 0 dispersed
Cmo17g00626 Cmo-Chr17:6571058 Cmo18g00544 Cmo-Chr18:4215426 0 dispersed
Cmo14g01254 Cmo-Chr14:10564460 Cmo17g00626 Cmo-Chr17:6571058 0 wgd
Cmo17g00626 Cmo-Chr17:6571058 Cmo08g00808 Cmo-Chr8:5112712 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
75008 PF07714 PK_Tyr_Ser-Thr 2.70E-43 CL0016 Cmo PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo17g00626 - - csv:101213107 1189.1