Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo17g00626 | ATGAATTGGAGGTGGAGGGAGCTGATATCTCTCATCCTTCTTTGCATTCTAGGATGGAAGCCTAGCTCCATTCAAGGAGCCACAGATCCAACAGATGCCTCTGCTTTAAGAGTTTTGTACTCCAGCTTAAACTCGCCGCCTCAGTTAACCAAGTGGAACGCAAATGGCGATGATCCTTGTGGACAATCATGGAAGGGGATTACTTGTTCTGGCACACGGGTTACGGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGGTACCAGCTTGCAAGTATGGCATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCTAACCTGAAAAGACTAAATCTTGCTAGAAACAACTTCAATAAAGGCATCCCTTATTCCATTTCCTTGATGCCTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGAATCCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATTCACATTGGATCTGTCTTTCAATGCTATGTCAGGCAACCTGCCTCAGAGTTTTAGCTCTCTTTCTGGCATCAGCACTATGAATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTTCCTCTTGATAACCTGAATGTTGAAAATAATCGTTTCACTGGCTGGATCCCTAATCAACTGAAGAACATTAATCTGCGGAAAGATGGCAACTCCTGGAGCTCAGGTTCTGCACCCCCTCCCCCACCTGGTACTCCCCCAGCCACCAGAAGGAACCGGAGTCACAGTTCTGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGATTAGGTGGTGGTGCCATTGCAGGAATTATCATCTCTGTGCTTGTCGTTGGAGCGGTAGTAGCATTCTTCATCGTCAAGAGGAGATCGAAGAGATCATCTTCAGACATTGAAAGGCTTGATAATCAACCCCTGCAACCTCTTAAAATGACTGCAACACAAGAAATGAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACAGCATTTGACACTTCTGCTGCAATTAATCTCAAACCCCCACCTATCGATCGTCATAAATCGTTTGATGAAGACGACTTCTCAAAACGAGCACCAGTCGTCAAGAAGGCCAGTGCAGCTCCTATTAATGTAAAGGCATATTCAATAGCAGACCTGCAAATGGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTATATCGGGCTGAGTTTGATAACGGAAAGGTTCTTGCGGTGAAAAAGATAAACTCGTCTGCACTACCGAGGGAATTAGCTGAAGATTTCACTGACATTGTTTCTCAAGTCTCCCAGTTACACCATCCCAATATAACCGAGCTGGTGGGGTATTGCTCAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTACGACTTCTTGCATCTATCAGATGAATACAACAGACCTCTAATATGGAATTCCCGCATTAAGATTGCCTTGGGAACAGCGCGCGCATTAGAGTATCTTCATGAAGTATGCTCCCCGTCAATTGTTCATAGAAACATCAAGTCCGCTAACATATTGCTGGATGCCGAATTCAGCCCCCACCTTTCTGATTCTGGACTGGAAAGCTTTGTACCTAATGCAGATCAGGCACTGGATGACGGTGCAAGTTCAGGATACACTGCCCCTGAGGTCACCATGTCCGGCCAATATACGTTGAAAAGCGACGTCTACAGTTTTGGTGTGGTCATGCTGGAACTCCTGACTGGACGCAAACCATTCGATAGTTCAAGGTCGAGGATGGAGCAATCTTTGGTTCGATGGGCTACACCACAGCTTCATGACATTGATGCTTTAACGAAGATGGTAGATCCCGAGCTCAAAGGACTATATCCAGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCGCTTTGCGTCCAGACTGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTACAGCGAGCTAACATGAGTAAGAGAACAGTTGGGAACGATAATGCAACATCTCCCAGGGGAGGAGAGATGGGTGGAGAGGACACACCATAG | 2145 | 45.64 | MNWRWRELISLILLCILGWKPSSIQGATDPTDASALRVLYSSLNSPPQLTKWNANGDDPCGQSWKGITCSGTRVTEINLSGLGLSGSLGYQLASMASVTNLDVSNNNIGGEIVYQLPPNLKRLNLARNNFNKGIPYSISLMPSLQYLNISHNQLQNPLIDMFGQLTSLFTLDLSFNAMSGNLPQSFSSLSGISTMNLQNNQFTGTIDVLATLPLDNLNVENNRFTGWIPNQLKNINLRKDGNSWSSGSAPPPPPGTPPATRRNRSHSSGGSPSNGGSSEGQKSGLGGGAIAGIIISVLVVGAVVAFFIVKRRSKRSSSDIERLDNQPLQPLKMTATQEMKSEETSSTFYPTAFDTSAAINLKPPPIDRHKSFDEDDFSKRAPVVKKASAAPINVKAYSIADLQMATGSFNVENLLGEGSFGRVYRAEFDNGKVLAVKKINSSALPRELAEDFTDIVSQVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDFLHLSDEYNRPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNIKSANILLDAEFSPHLSDSGLESFVPNADQALDDGASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRSRMEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTVGNDNATSPRGGEMGGEDTP | 714 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
17 | 6571058 | 6577437 | + | CmoCh17G006260.1 | Cmo17g00626 | 401009 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo17g00626 | 714 | Pfam | Leucine rich repeat N-terminal domain | 30 | 70 | IPR013210 | - | |
Cmo17g00626 | 714 | Pfam | Protein tyrosine and serine/threonine kinase | 411 | 681 | IPR001245 | GO:0004672|GO:0006468 | |
Cmo17g00626 | 714 | SUPERFAMILY | L domain-like | 28 | 234 | - | - | |
Cmo17g00626 | 714 | MobiDBLite | consensus disorder prediction | 260 | 281 | - | - | |
Cmo17g00626 | 714 | MobiDBLite | consensus disorder prediction | 692 | 714 | - | - | |
Cmo17g00626 | 714 | CDD | STKc_IRAK | 415 | 684 | - | - | |
Cmo17g00626 | 714 | Gene3D | Ribonuclease Inhibitor | 175 | 247 | IPR032675 | - | |
Cmo17g00626 | 714 | Pfam | Leucine Rich repeat | 97 | 114 | IPR001611 | GO:0005515 | |
Cmo17g00626 | 714 | Pfam | Leucine Rich repeat | 142 | 156 | IPR001611 | GO:0005515 | |
Cmo17g00626 | 714 | PANTHER | PROTEIN STRUBBELIG-RECEPTOR FAMILY 6 | 19 | 708 | - | - | |
Cmo17g00626 | 714 | MobiDBLite | consensus disorder prediction | 239 | 283 | - | - | |
Cmo17g00626 | 714 | ProSitePatterns | Protein kinases ATP-binding region signature. | 415 | 438 | IPR017441 | GO:0005524 | |
Cmo17g00626 | 714 | Gene3D | Phosphorylase Kinase; domain 1 | 374 | 486 | - | - | |
Cmo17g00626 | 714 | Gene3D | Transferase(Phosphotransferase) domain 1 | 488 | 703 | - | - | |
Cmo17g00626 | 714 | SUPERFAMILY | Protein kinase-like (PK-like) | 391 | 681 | IPR011009 | - | |
Cmo17g00626 | 714 | Gene3D | Ribonuclease Inhibitor | 30 | 174 | IPR032675 | - | |
Cmo17g00626 | 714 | ProSiteProfiles | Protein kinase domain profile. | 409 | 684 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cmo17g00626 | 714 | PANTHER | OS01G0253100 PROTEIN | 19 | 708 | IPR045271 | GO:0004714|GO:0006468 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo01g00024 | Cmo17g00626 | CCT | |
Cmo08g00808 | Cmo17g00626 | CST | |
Cmo08g00578 | Cmo17g00626 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo01g00024 | Cmo-Chr1:83641 | Cmo17g00626 | Cmo-Chr17:6571058 | 0 | dispersed | |
Cmo15g01506 | Cmo-Chr15:10197461 | Cmo17g00626 | Cmo-Chr17:6571058 | 0 | dispersed | |
Cmo17g00626 | Cmo-Chr17:6571058 | Cmo18g00544 | Cmo-Chr18:4215426 | 0 | dispersed | |
Cmo14g01254 | Cmo-Chr14:10564460 | Cmo17g00626 | Cmo-Chr17:6571058 | 0 | wgd | |
Cmo17g00626 | Cmo-Chr17:6571058 | Cmo08g00808 | Cmo-Chr8:5112712 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
75008 | PF07714 | PK_Tyr_Ser-Thr | 2.70E-43 | CL0016 | Cmo | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo17g00626 | - | - | csv:101213107 | 1189.1 |