Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00026 ATGGCTTCCCTACTCTCTTCTGCTTTCTTCCTCCTCTTTCTGTTCTTCCACTTCTTCTCTGCAACTTGCACTGAATTCCTCGTCGGTGATGAACATGGGTGGGCTGTCCCTCAGCATAAACACGCTGATAGATACAATAAATGGGCCTCCCATAACAGATTCAACGTTGATGACACCCTCCATTTCAAGTTCGAGAAAGATTCAGTGATGGAGGTGACAGAGGAAGAGTACAAGCAATGCCTTTCTTCGAAGCCTCTGTTGTACAACAACAATGGCGACGCAGTGGTGAGACTTGAGAGAGCAGGGCTGTTCTATTTCATAAGTGGAGTTTCAGGGCACTGTGAGAAAGGGCAGAGGATGATAATCAAAGTGTTGGAACCGCTCAGCCCTCCGCAGCCACCCACTGCTCCGCCCCAAAACAACAACACCCCACTCTCTGTTTCATCTCCAATGCTTGCACTTTTCTTCATGTTCTTTGTTTCCTTTCTGTTCATTTGA 498 47.19 MASLLSSAFFLLFLFFHFFSATCTEFLVGDEHGWAVPQHKHADRYNKWASHNRFNVDDTLHFKFEKDSVMEVTEEEYKQCLSSKPLLYNNNGDAVVRLERAGLFYFISGVSGHCEKGQRMIIKVLEPLSPPQPPTAPPQNNNTPLSVSSPMLALFFMFFVSFLFI 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 105211 106123 + CmoCh18G000260.1 Cmo18g00026 401799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00026 165 Pfam Plastocyanin-like domain 34 118 IPR003245 GO:0009055
Cmo18g00026 165 ProSiteProfiles Phytocyanin domain profile. 24 126 IPR003245 GO:0009055
Cmo18g00026 165 Gene3D - 22 128 IPR008972 -
Cmo18g00026 165 PANTHER BLUE COPPER PROTEIN 9 158 IPR039391 GO:0009055
Cmo18g00026 165 SUPERFAMILY Cupredoxins 23 125 IPR008972 -
Cmo18g00026 165 PANTHER EARLY NODULIN-LIKE PROTEIN 6 9 158 - -
Cmo18g00026 165 CDD OsENODL1_like 24 125 IPR041846 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02787 Cmo-Chr4:20071910 Cmo18g00026 Cmo-Chr18:105211 1.92E-41 dispersed
Cmo18g00026 Cmo-Chr18:105211 Cmo17g00749 Cmo-Chr17:7389175 1.55E-34 dispersed
Cmo01g01115 Cmo-Chr1:9235532 Cmo18g00026 Cmo-Chr18:105211 2.38E-24 transposed
Cmo13g01087 Cmo-Chr13:8985209 Cmo18g00026 Cmo-Chr18:105211 4.65E-56 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00026 - - cmo:103495780 201.445