Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00244 | ATGACGAAACGTCGTCCCGCCACCGCCACCGCCACCACCACCGCCACTCTGGTCCTCGTCCTCGTCTTGTTCGAACGTTCGAAGCAGATGGCCTTAGCGGAAAATGGGGTCCCGGCGATCTTCGTGTTTGGAGACTCTCTTGTGGATGTTGGCAACAATAATTTTCTTCATTCAGCTGCTAGAGCTAACTTTTACCCTTATGGGATTGATTTTCGTGGTGGTCCGACCGGGAGATTCTCTAATGGAAGAACTGTTATAGATATGATTGTTGATTACCTTGGAATTCCGAACGCTCAAGAGTTTGCAAATCCCGATACTTCGGGAGATAGAATCCTTAAAGGTGTTAATTACGCTTCGGCGGCTGCTGGCATCCTCGATGAGACCGGTAGACACTATGGAGAGAGGTACAGTTTAAATCAGCAAGTGGTGAACTTCGAAAGCACTCGGAATGATTTAAGAAAAACAATGGACAATTGGAATTTGACTCGCTACTTATCGAGATCCATGGCTTTCATGGCGTTTGGAAGCAACGATTACATAAACAACTACCTGATGCCCAATCTCTATACTTCTAGATTCAGATACACCTCCAACCAATTCGCCGACCATCTTCTCAACAGCTATACTCGACAGCTTCTCGCACTACGAAGTGCAGGGCTAAGGAAGTTTGTGGTGGCCGGAATTGGGCCGTTGGGTTGCATTCCGAACCAACGGGCGACTGGCGTGGCGCTTCCAGGGCGGTGTGTGGATAACGTGAATGAGATGTTGGGAGATTTTAACGAAGGGTTGAGATCGCTAGTAACTCAGTTGAATAGCCAGTACCCGGATTCGTACTTCGTGTACACCAATATCTATGGCATTTTTGGTGACATCTTGAACAACCCAGATAACTACGGGTTTCGAGTGGTGGACACGGCATGCTGTGGAGTTGGGTTAAACAGAGGCCAAATAACGTGCTTACCACTCCAATTTCCATGCCTTAACCGAGATGAGTATGCGTTTTGGGATGCCTATCACCCAACGGAGGCTGCCTCCGTCGTGCTTGCCGACCGAGCTTTTAGAGGTCCACCCTCTGATTCCTACCCCATCAATATCCAACAGTTGGCTCTCCTATCCTTGTAA | 1122 | 48.4 | MTKRRPATATATTTATLVLVLVLFERSKQMALAENGVPAIFVFGDSLVDVGNNNFLHSAARANFYPYGIDFRGGPTGRFSNGRTVIDMIVDYLGIPNAQEFANPDTSGDRILKGVNYASAAAGILDETGRHYGERYSLNQQVVNFESTRNDLRKTMDNWNLTRYLSRSMAFMAFGSNDYINNYLMPNLYTSRFRYTSNQFADHLLNSYTRQLLALRSAGLRKFVVAGIGPLGCIPNQRATGVALPGRCVDNVNEMLGDFNEGLRSLVTQLNSQYPDSYFVYTNIYGIFGDILNNPDNYGFRVVDTACCGVGLNRGQITCLPLQFPCLNRDEYAFWDAYHPTEAASVVLADRAFRGPPSDSYPINIQQLALLSL | 373 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 1611522 | 1613282 | - | CmoCh18G002440.1 | Cmo18g00244 | 402017 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00244 | 373 | PANTHER | GDSL-LIKE LIPASE/ACYLHYDROLASE | 16 | 370 | - | - | |
| Cmo18g00244 | 373 | Pfam | GDSL-like Lipase/Acylhydrolase | 40 | 350 | IPR001087 | GO:0016788 | |
| Cmo18g00244 | 373 | PANTHER | GDSL-LIKE LIPASE/ACYLHYDROLASE-RELATED | 16 | 370 | - | - | |
| Cmo18g00244 | 373 | SUPERFAMILY | SGNH hydrolase | 39 | 352 | - | - | |
| Cmo18g00244 | 373 | Gene3D | SGNH hydrolase | 25 | 355 | IPR036514 | - | |
| Cmo18g00244 | 373 | CDD | SGNH_plant_lipase_like | 38 | 356 | IPR035669 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo09g01300 | Cmo-Chr9:11521885 | Cmo18g00244 | Cmo-Chr18:1611522 | 1.53E-118 | dispersed | |
| Cmo16g00933 | Cmo-Chr16:5805041 | Cmo18g00244 | Cmo-Chr18:1611522 | 1.44E-68 | dispersed | |
| Cmo18g00244 | Cmo-Chr18:1611522 | Cmo20g01168 | Cmo-Chr20:11493507 | 3.93E-85 | dispersed | |
| Cmo02g01215 | Cmo-Chr2:7309118 | Cmo18g00244 | Cmo-Chr18:1611522 | 4.87E-39 | transposed | |
| Cmo03g00470 | Cmo-Chr3:5152719 | Cmo18g00244 | Cmo-Chr18:1611522 | 4.34E-81 | transposed | |
| Cmo14g00841 | Cmo-Chr14:4377722 | Cmo18g00244 | Cmo-Chr18:1611522 | 1.14E-90 | transposed | |
| Cmo10g00210 | Cmo-Chr10:939620 | Cmo18g00244 | Cmo-Chr18:1611522 | 3.51E-74 | transposed | |
| Cmo13g00869 | Cmo-Chr13:7920091 | Cmo18g00244 | Cmo-Chr18:1611522 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00244 | - | - | csv:116402503 | 619.002 |