Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g00253 ATGAACAGCACAAGAGAAGTGGAAATTGTGGGTTCAATTCCACAGGAGGAGGATCAAAAAGACCCAGAAGCTGGTTCCAATTCGATTGATTCTCGACCCAAATTTATCCCACAAGAACAAGAACAAGAACAAGAACAAGAACGCGAACGCGCTTCTTCGTTGAGTGAGAAAGTCGAGGTGGTTGTCGAACGCAACCTCATTCTTGCAGCGTCTATCGGTGACGACTTTCAATTGGAAGTCACTGCCGATCAGATCAATAGCCACTGCGCCACGGCCGACACCCAAACCGTCGACATTGAAGAACCCCTTGATGAAGAAACTAAACAGTTGAGGACAACCGCCAAAAAAATCAGCCTATATCACGCTGCACTCAAGGGAGATTGGGAGAAGGCTCAATCCATTCTAGGCGCGGACCCTTCATGGGCTGTAAGCAACTACATAACGCGAGACAACGAGACAGCTCTTCACATTGCTGCTGGGGCCAAGCACGTCGATTTCGTAGAGCAATTGATCAACATAATGACCCCAGACGACATGACTATGGTAAACACTCATGGAAACACTGCCCTTTGCTTTGCTGCAACCTCGGGTGTTGTAAGAATCGCTGAACTGATGGTGCAAAAGAACAAAGATCTTCCCCTTATTCGTGGATTTGGTAATGCCACTCCCCTGTTCATGGCTATATCGTATCAACGCAAGCAAATGGCTTCTTATCTGTTCTCTGTTACCGATCGAAAGCAGCTGAGCTCTCAAGACCAGATTGAGCTTCTTATTGCTACCATTCATAGTGATTTTTATGATATAAGTTTGGAGATTCTGGAAAGGAACCCTAAGTTAGCGATTATGAGAGACACTAAGAATAATAATGAGACGGCGTTGCATGTCTTGGCAAGGAAACCATCTGCCATTAGTAGCAGATCAGAGATGAGTGTTTGGAAGAAGCGTATCAACTCATGGACAAGAGGAATCTACGAGAAAGAAGTGATGAAGACACTAGCTCATCAACTAGTTAGATCACTATGGGGACATGTCCTACGAGAATTACCCGAAAAAAAGATGTTAAAGTTCATCAAACATCCCACAATACTCTTACACGATGCAGCAAGAGCAGGCAACGTCGAGTTTCTAATCCTCCTCATTCGATCATACCCAAACATCGCATGGGAAGATGACGAAAATGGCCAGAATGTCTTTCACGTAGCCGTTGAAAATCGCCTCGAGAATGTGTTCAGCCTAATCCACGAGATAAGTGGCCTCAAAGACTTCTCAGCAAAGTACAGAACAACAGGTCAAGAAAAGTACAACATGCTTCATTTAGCTGCAAAGCTCGCCGCTCCAAACCATCTCAACAGAGTCTCGGGAGCAGCCCTTCAAATGCAACGTGAATTACTTTGGTTCAAAGAAGTAGAAAAGATCGTGTTACCATCCCAACGTGAAGCCAAATGTGAGTTTGAGTCTCTTAAGTTAATACCAAGTGAGTTATTCACTAAAGAACATAAAGATCTTCGTAAAGAAGGTGAAGAATGGATGAAGAACACAGCAAATTCTTGTATGCTTGTCTCAACTTTGATAGCTACTGTTGTTTTTGCTGCTGCTTTCACAGTTCCTGGTGGCAATGATGCTAAAGGCACCCCTGTTTTTCAACGTGAGTTTTGGTTTACTATATTTGTGATATCAGATGCATTTGCGTTGGTATCATCTTCAACTTCTATTCTTATGTTCTTGTCGATTTTGACATCACGTTATGCGGAAGATGATTTCTTGCACTCATTGCCGTCTAAGCTGCTGTTTGGAATAGCGTCGCTGTTCATATCAATTGTGTGCATGGTTATAGCGTTTAGTGCGACATTCTTTATGCTCTATGATGGGACCAATGTGTGGATACCGACCACTGTGACAGCAATAGCTATTGTGCCAATTAGCTGCTTCTTTGCGCTTCAATTTGGACTGTGGATGGATACGTTTTACAACACTTACTTGTCTAGACTTCTGTTCAAACCCCATCAACGTAAGTTGTTCTCATCCTCTGCTTCTCTTGCTGTTGAATTGTTTCGTGAGCTTAAGAAAAGGAGAAGTGAGAGGAAATACTATCGGTGGGAACGTTGTGATTGTTTACTTGTTTGTTTGTTATGTTGTGATTATGAGATATGTTATGTTATGGAATATCTTGTTGACATGTTGTGTGGTTGA 2190 42.88 MNSTREVEIVGSIPQEEDQKDPEAGSNSIDSRPKFIPQEQEQEQEQERERASSLSEKVEVVVERNLILAASIGDDFQLEVTADQINSHCATADTQTVDIEEPLDEETKQLRTTAKKISLYHAALKGDWEKAQSILGADPSWAVSNYITRDNETALHIAAGAKHVDFVEQLINIMTPDDMTMVNTHGNTALCFAATSGVVRIAELMVQKNKDLPLIRGFGNATPLFMAISYQRKQMASYLFSVTDRKQLSSQDQIELLIATIHSDFYDISLEILERNPKLAIMRDTKNNNETALHVLARKPSAISSRSEMSVWKKRINSWTRGIYEKEVMKTLAHQLVRSLWGHVLRELPEKKMLKFIKHPTILLHDAARAGNVEFLILLIRSYPNIAWEDDENGQNVFHVAVENRLENVFSLIHEISGLKDFSAKYRTTGQEKYNMLHLAAKLAAPNHLNRVSGAALQMQRELLWFKEVEKIVLPSQREAKCEFESLKLIPSELFTKEHKDLRKEGEEWMKNTANSCMLVSTLIATVVFAAAFTVPGGNDAKGTPVFQREFWFTIFVISDAFALVSSSTSILMFLSILTSRYAEDDFLHSLPSKLLFGIASLFISIVCMVIAFSATFFMLYDGTNVWIPTTVTAIAIVPISCFFALQFGLWMDTFYNTYLSRLLFKPHQRKLFSSSASLAVELFRELKKRRSERKYYRWERCDCLLVCLLCCDYEICYVMEYLVDMLCG 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 1683325 1688326 - CmoCh18G002530.1 Cmo18g00253 402026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g00253 729 SUPERFAMILY Pseudo ankyrin repeat-like 312 442 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 36 53 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 1 53 - -
Cmo18g00253 729 PANTHER CASKIN 147 673 - -
Cmo18g00253 729 MobiDBLite consensus disorder prediction 11 27 - -
Cmo18g00253 729 Pfam Domain of unknown function 507 619 IPR026961 -
Cmo18g00253 729 Pfam Ankyrin repeats (3 copies) 119 211 IPR002110 GO:0005515
Cmo18g00253 729 Gene3D - 85 450 IPR036770 -
Cmo18g00253 729 SMART ANK_2a 219 248 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 150 181 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 185 214 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 393 424 IPR002110 GO:0005515
Cmo18g00253 729 SMART ANK_2a 359 388 IPR002110 GO:0005515
Cmo18g00253 729 PANTHER ANKYRIN REPEAT PROTEIN 147 673 - -
Cmo18g00253 729 SUPERFAMILY Ankyrin repeat 119 299 IPR036770 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo18g00253 Cmo-Chr18:1683325 Cmo18g00304 Cmo-Chr18:1959023 0 dispersed
Cmo18g00305 Cmo-Chr18:1966047 Cmo18g00253 Cmo-Chr18:1683325 7.46E-31 dispersed
Cmo18g00253 Cmo-Chr18:1683325 Cmo18g00258 Cmo-Chr18:1713640 0 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g00253 - - csv:101209008 1150.58