Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cmo18g00812 | ATGTCAAATTCTGAAACTGCCGACAGCTCTAATGGCGCCGCCATCGACACCCACAAAAACCAGCCCTCTTCCAACGGAGCCCTCGCCGTTAAAAAGCCCCCTTCCAAGGACCGCCACAGCAAGGTGGACGGCCGTGGCCGTCGCATCCGTATGCCCATAATCTGCGCCGCTCGTGTCTTCCAGCTGACTCGTGAACTTGGTCATAAATCCGATGGCCAAACCATCGAGTGGCTCCTCCGTCAAGCAGAGCCTTCCATTATTGCTGCCACCGGCACCGGCACTACTCCCGCTAATTTCTCTTCCATCTCTCTCTCCGTCAGAGGAAATGGCAGCTCCGCCTCTCTCTCTTCCACTACTTCCACTCTCTCCCTCTCTCGCCCCCAGCCGTTCATTCTCGGGAAGCGTGTCAGAGCCGACGACGACGGCGGTACTGACGATGGGTTGGGAGTGGGTCCGAGTGGGTACTGGGCGATTCCGGCCAGACCGGATTACGGGCAGGTGTGGAGTTTCGCGGCTGCCGCCGCCGCGGAACAGAGGATTTCTCAGCCGGCGTCGTTGTTTGCTCAACAGCAACAGCCGATTAGAGAAGCATCGGCAGCAAGAGTTGGGAATTACCTTCCGGGTCATCTGAATTTACTGGCGTCCTTGTCCGGTGGCGGCGGTGCCGGCCGGCGGGAAGACGACTGTCGTTGA | 693 | 59.16 | MSNSETADSSNGAAIDTHKNQPSSNGALAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPANFSSISLSVRGNGSSASLSSTTSTLSLSRPQPFILGKRVRADDDGGTDDGLGVGPSGYWAIPARPDYGQVWSFAAAAAAEQRISQPASLFAQQQQPIREASAARVGNYLPGHLNLLASLSGGGGAGRREDDCR | 230 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 9545980 | 9546672 | + | CmoCh18G008120.1 | Cmo18g00812 | 402585 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cmo18g00812 | 230 | MobiDBLite | consensus disorder prediction | 32 | 47 | - | - | |
| Cmo18g00812 | 230 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
| Cmo18g00812 | 230 | ProSiteProfiles | TCP domain profile. | 35 | 89 | IPR017887 | - | |
| Cmo18g00812 | 230 | Pfam | TCP family transcription factor | 35 | 125 | IPR017887 | - | |
| Cmo18g00812 | 230 | PANTHER | TRANSCRIPTION FACTOR TCP21-RELATED | 1 | 226 | - | - | |
| Cmo18g00812 | 230 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Cmo18g00812 | 230 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 1 | 226 | IPR005333 | GO:0003700 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cmo04g02347 | Cmo-Chr4:17436112 | Cmo18g00812 | Cmo-Chr18:9545980 | 5.86E-79 | dispersed | |
| Cmo10g00203 | Cmo-Chr10:910288 | Cmo18g00812 | Cmo-Chr18:9545980 | 2.15E-39 | dispersed | |
| Cmo11g00159 | Cmo-Chr11:799344 | Cmo18g00812 | Cmo-Chr18:9545980 | 5.89E-40 | dispersed | |
| Cmo15g00816 | Cmo-Chr15:4063640 | Cmo18g00812 | Cmo-Chr18:9545980 | 3.67E-83 | dispersed | |
| Cmo18g00812 | Cmo-Chr18:9545980 | Cmo18g01183 | Cmo-Chr18:11881839 | 1.56E-40 | dispersed | |
| Cmo18g00812 | Cmo-Chr18:9545980 | Cmo04g01331 | Cmo-Chr4:6776828 | 2.27E-110 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 11519 | PF03634 | TCP | 7.10E-34 | No_clan | Cmo | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cmo18g00812 | K16221 | - | csv:101206050 | 323.553 |