Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo18g01098 ATGGTTTTGGTGCGCAGCTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGTGGTTTAATGATCAAGAGCGCTCATTTTCATGCAAGTCTTGTTGAGTGGCTTATACATCTAATGGATATTGGCGGCGGAGATCAATTTAGAGTAGAAAGTAGCCCACAGGATTGTATGTCTTTGGATATGGCTGGTTGTTCTTCTTCCACTGCTCATGTGGTTGAGTCATTTAGCTCTACCATTTGGGAACAAGCAGCTAATTCTCAAAACTTGGGACTCCTCGAAGAACATAACATATGTAGAACTTCAAACGACATAGCAATTAACAAGACCATTGGCTGTCCTATTCCTTTGAGCAGTGACAATGACAAAACACTTGATATCAGCTGGAGCTTGTCCAATAATATGTTGAAAGGGGGAGGTTACCTTAATGCAATCCCGCCGAGCTTATCTCAACTTCCAGCTGATTCTTCGTTTATTGAGCGTGCAGCCAGGTTCTCCTGGTTTAGTGGTGGAAATTTTGGTGATGTTACTGGACATTTTGATATTCCTGAGCCTATGGACGTTTTTTCTAGAGGTATGGGAGTAGTAATGCCTGAGAGACAGGAGGATGTTCCTAGACGAAACGGGTTAGGTTCGGTATCTCGAGCCGGAGGACGATTCCAGGGAAATACGGTTAACAGTGAAGCTTCCAAGCCTGTTTCTTTGCATAATGCAGCACATGGAAGCCTTTTGAAATTGGACGATTGTTGTAAACATGCTGTTGATGGTTCTGCTAATGAATCTGAGCTTAGCGGTGGCGATGGTTCGGGTGAGCCATGCACGTTAGAGGTTGCAGGTAAGGAAGTTTCTGCTAAGGGCATCGCTGCAAAGAAAAGGAAAAGGAGTGGACAGAAGGCTGAACTTGATCAAGTCAATGGACCTCTGCAACAAACTAGTGTTGCAGCTCAGGATAATACTGAATCTCAGCTAAAGGGAGATCAAAACCCGAGCTCGACCGCAAACAAGGGTACAGTAAAGCACGGTAAACAGGCGTCTCAACCTTTAGATCCACCAAAGGAAGAGTATATTCATGTTCGAGCTCGAAGAGGCCAGGCGACAAACAGCCATAGTCTTGCAGAAAGGGTAAGGAGGGAGAAAATCAGTGAGAGGATGAAATTTCTTCAAGAACTAGTGCCTGGTTGCAGCAAGGTGACTGGGAAGGCAGTGATGCTCGATGAAATCATTAACTATGTTCAGTCTCTGCAACGACAAGTCGAGGTACGAAAATCCGTTTATATGCTTCACAGCTTTAGTATATTCTTGAGATAG 1302 45.01 MVLVRSCSSSSSSSSSRGLMIKSAHFHASLVEWLIHLMDIGGGDQFRVESSPQDCMSLDMAGCSSSTAHVVESFSSTIWEQAANSQNLGLLEEHNICRTSNDIAINKTIGCPIPLSSDNDKTLDISWSLSNNMLKGGGYLNAIPPSLSQLPADSSFIERAARFSWFSGGNFGDVTGHFDIPEPMDVFSRGMGVVMPERQEDVPRRNGLGSVSRAGGRFQGNTVNSEASKPVSLHNAAHGSLLKLDDCCKHAVDGSANESELSGGDGSGEPCTLEVAGKEVSAKGIAAKKRKRSGQKAELDQVNGPLQQTSVAAQDNTESQLKGDQNPSSTANKGTVKHGKQASQPLDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEVRKSVYMLHSFSIFLR 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 11457766 11459974 + CmoCh18G010980.1 Cmo18g01098 402871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo18g01098 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 362 412 IPR011598 GO:0046983
Cmo18g01098 433 Pfam Helix-loop-helix DNA-binding domain 365 413 IPR011598 GO:0046983
Cmo18g01098 433 MobiDBLite consensus disorder prediction 300 339 - -
Cmo18g01098 433 PANTHER TRANSCRIPTION FACTOR BHLH49 39 417 - -
Cmo18g01098 433 MobiDBLite consensus disorder prediction 283 297 - -
Cmo18g01098 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 360 427 IPR036638 GO:0046983
Cmo18g01098 433 SMART finulus 368 418 IPR011598 GO:0046983
Cmo18g01098 433 Gene3D - 358 422 IPR036638 GO:0046983
Cmo18g01098 433 MobiDBLite consensus disorder prediction 200 227 - -
Cmo18g01098 433 MobiDBLite consensus disorder prediction 283 349 - -
Cmo18g01098 433 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 39 417 IPR024097 GO:0006355
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo15g00881 Cmo18g01098 CCT
Cmo04g01641 Cmo18g01098 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo04g02285 Cmo-Chr4:17008547 Cmo18g01098 Cmo-Chr18:11457766 3.22E-72 dispersed
Cmo15g00881 Cmo-Chr15:4461494 Cmo18g01098 Cmo-Chr18:11457766 2.56E-74 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo14g01559 Cmo-Chr14:12449597 5.36E-39 dispersed
Cmo18g01098 Cmo-Chr18:11457766 Cmo04g01641 Cmo-Chr4:8388080 9.10E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11548 PF00010 HLH 4.40E-06 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo18g01098 - - bhj:120081983 513.457