Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00246 ATGGGGTCTTATGGCAGCCCTAAGACTTGGATACCTTATATGAGCAACAAAGATTGCTCTCAAGGTTTTTGTAGTGTATATTGTCCTCAATGGTGCTACATCATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGCAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCCATTACGGTTTGCAAGTACGAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACATGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTGAGAAGTGATTGTGGGAAGAACTCGGTTCGTGCCTTCAGTGACCTCGGAGTACCAGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGATGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAAGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAAGTGGAAGATTTTCTCTCATTAGGCATGGAAAAGAACAAAGAGAAATCGCCCGTGTCTGA 1068 42.42 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITVCKYERGDGLVEGSDCSVCLSEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTHDPEAVSQDSERSLRSDCGKNSVRAFSDLGVPEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRSFSSGRFSLIRHGKEQREIARV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1728060 1729127 - CmoCh19G002460.1 Cmo19g00246 403406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00246 355 MobiDBLite consensus disorder prediction 208 222 - -
Cmo19g00246 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 345 - -
Cmo19g00246 355 CDD RING-H2_PA-TM-RING 142 185 - -
Cmo19g00246 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 345 IPR044675 -
Cmo19g00246 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cmo19g00246 355 SUPERFAMILY RING/U-box 133 193 - -
Cmo19g00246 355 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cmo19g00246 355 MobiDBLite consensus disorder prediction 208 236 - -
Cmo19g00246 355 Pfam Ring finger domain 142 185 IPR001841 -
Cmo19g00246 355 SMART ring_2 143 184 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g01662 Cmo19g00246 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01797 Cmo-Chr2:10206595 Cmo19g00246 Cmo-Chr19:1728060 2.69E-34 dispersed
Cmo03g00868 Cmo-Chr3:6774014 Cmo19g00246 Cmo-Chr19:1728060 1.89E-48 dispersed
Cmo05g00542 Cmo-Chr5:2619017 Cmo19g00246 Cmo-Chr19:1728060 3.03E-47 dispersed
Cmo06g01226 Cmo-Chr6:9301916 Cmo19g00246 Cmo-Chr19:1728060 4.78E-89 dispersed
Cmo08g00982 Cmo-Chr8:6392551 Cmo19g00246 Cmo-Chr19:1728060 1.27E-76 dispersed
Cmo14g01978 Cmo-Chr14:14563522 Cmo19g00246 Cmo-Chr19:1728060 1.44E-83 dispersed
Cmo17g00076 Cmo-Chr17:400573 Cmo19g00246 Cmo-Chr19:1728060 3.34E-70 dispersed
Cmo20g00883 Cmo-Chr20:4456060 Cmo19g00246 Cmo-Chr19:1728060 3.28E-24 dispersed
Cmo20g00470 Cmo-Chr20:2168024 Cmo19g00246 Cmo-Chr19:1728060 4.09E-25 transposed
Cmo11g01477 Cmo-Chr11:10443138 Cmo19g00246 Cmo-Chr19:1728060 2.02E-48 wgd
Cmo19g00246 Cmo-Chr19:1728060 Cmo02g01662 Cmo-Chr2:9563701 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00246 - - cmo:103503554 622.468