Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo19g00256 ATGGATTCACGTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGATCGGAGGACCGTCGGCGTATTCAACCGCCATGACCAATGCCAACAACAATGCCTCTTCCAATATGGCTCTCTTTCCGCCTACCTCTCAGATGATGCCTCCTTCTGCGCGATTTCCGTTCAAGTCTGTGATCTCCCCTGCATCCCTGCATTTGGATTCTATGAACGCTTCTCCTTACGACGGAACGCATTCCGGAAATTTCAATGTCGATTCCGGAAAGAAAAGGAGGGGCCGGCCGAGGAAGTACGATCCTGATGGTAATATCATCGCCTTGGGTTTGGCACCTACCACTGTTGTTACCTCTTCTGTTGTGCACGGGGATTTGAGCGCTACTCCTGATTTGGAGCAGCCGGTCAGGAAACCGAGGGGAAGGCCGCGGGGCTCTGGAAAGAAACAGACGAATGCTCTTGGTTCAAGCGGCACTAGTTTTACTCCTTACGCCGTATTGGCGAAGCCTGGAGAGGATGTAGTAGCCAAAATTTTGTCATACTCACAGCAAGGAACACGAACTGCCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTAGACACTCGGCATCGTCTGGTGGTTCTGTGACATATAAGGGCCAGTTTGAGATCATCTCTCTGTCAGGCCCCATTTTGCCCTTGGAGAACAATGAAACTGGAAGTAGAACAGGTGGTTTGAATGTGCTCCTGGCTGGGTCAGATGGACAGGTTCTTGGTGGTGGTGTTGCAGGAATGCTCATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAATTTTCTGGAGGATGATAAAAATTTCAACACCACAAGTATGCTGAATTCTGGATCGTCTTCTGCCCCATTACAAATGATGAACTTTGGTGGTGGTGGTGGTGGTGGTGATGCAGCATCGTCGTCATCAGCAGTAGCAGCAGCAGCAGCAGCCAGCCCTCGGTCGTTAGGGGCATCGAGCGGGGAGTCGTCTGCTGAAAATGGAGAGAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATAATAATAATAATACCAGCCAGCCGATGCACAATAATAATCAGATGTACCACCAATTATGGTCAGGCCAAACGCAGCAGTGA 1149 49.61 MDSRDTPPPPLSAPSNMAIGGPSAYSTAMTNANNNASSNMALFPPTSQMMPPSARFPFKSVISPASLHLDSMNASPYDGTHSGNFNVDSGKKRRGRPRKYDPDGNIIALGLAPTTVVTSSVVHGDLSATPDLEQPVRKPRGRPRGSGKKQTNALGSSGTSFTPYAVLAKPGEDVVAKILSYSQQGTRTAFILSANGTISNATLRHSASSGGSVTYKGQFEIISLSGPILPLENNETGSRTGGLNVLLAGSDGQVLGGGVAGMLMAGSQVQVIVGNFLEDDKNFNTTSMLNSGSSSAPLQMMNFGGGGGGGDAASSSSAVAAAAAASPRSLGASSGESSAENGESPLNNRHPGMFNNNNNNTSQPMHNNNQMYHQLWSGQTQQ 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 1864916 1869691 + CmoCh19G002560.1 Cmo19g00256 403416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo19g00256 382 MobiDBLite consensus disorder prediction 328 368 - -
Cmo19g00256 382 CDD DUF296 162 276 IPR005175 -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 330 368 - -
Cmo19g00256 382 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 1 23 - -
Cmo19g00256 382 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 278 - -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 126 157 - -
Cmo19g00256 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 344 IPR039605 GO:0003680
Cmo19g00256 382 MobiDBLite consensus disorder prediction 87 101 - -
Cmo19g00256 382 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 46 344 - -
Cmo19g00256 382 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Cmo19g00256 382 Gene3D - 164 290 - -
Cmo19g00256 382 MobiDBLite consensus disorder prediction 73 101 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo16g01203 Cmo19g00256 CCT
Cmo06g00662 Cmo19g00256 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo19g00256 Cmo-Chr19:1864916 Cmo01g02098 Cmo-Chr1:14534772 1.03E-58 dispersed
Cmo16g01203 Cmo-Chr16:8608087 Cmo19g00256 Cmo-Chr19:1864916 1.96E-86 wgd
Cmo19g00256 Cmo-Chr19:1864916 Cmo02g01652 Cmo-Chr2:9527908 2.96E-178 wgd
Cmo19g00256 Cmo-Chr19:1864916 Cmo06g00662 Cmo-Chr6:3334907 2.99E-88 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo19g00256 - - cmos:111463805 650.203