Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00687 ATGGAGACAGGCGGCAATTCATTATCATCTGGGCCTGACGGCGTGAAGAGGAAGGTCAGCTATTTCTACGACCCTGAGGTCGGGAATTACTATTATGGGCAGGGGCACCCAATGAAGCCACACCGAATCCGAATGACGCATGCCCTTCTCGCCCATTATGGCTTACTCCAGCATATGCAGGTTTTCAAGCCTCTTCCTGCGAGAGATAAAGTCCTCTGCAGATTTCACGCTGATGATTATGTGGCGTTTCTTAAAAACATTACCCCTGAAACGCAGCAAGACCAGTTGAGACAGCTTAAGCGCTTCAATGTTGGTGAGGACTGTCCTGTCTTCGATGGCCTTTATTCTTTCTGTCAAACTTATGCTGGTGGATCTGTTGGTGGTGCCGTTAAGTTAAACCATAAGGTTTGTGATATTGCTGTCAATTGGTCTGGTGGTCTACACCATGCGAAGAAGTGCGAAGCTTCTGGGTTCTGTTATGTCAATGATATTGTTCTGGCGATACTGGAGCTCCTTAAACATTATGAGCGTGTTTTATATGTTGACATTGATATCCACCATGGAGATGGTGTTGAAGAGGCTTTTTATACAACCGACAGAGTCATGACTGTATCGTTCCACAAATTTGGAGATTATTTTCCCGGTACAGGAGATATAAGAGACATTGGTTATGGGAAAGGAAAGTACTACTCACTTAATGTTCCTTTGGATGATGGAATTGATGATGAGAGCTATCATTACTTGTTCAAACCTATAATGGGAAAAGTTATGGAAGTTTTTAGACCTGGTGCTGTTGTTCTCCAATGTGGTGCTGACTCTCTTTCTGGCGATAGGCTAGGATGCTTTAACCTGTCAATAAAAGGTCATGGAGAGTGTGTTAGATATATGAGATCATTCAATGTGCCTCTATTACTGCTTGGTGGGGGTGGCTACACCATCCGTAACGTTGCTCGCTGCTGGTGCTACGAGGTACACATTTTGCTTTCAAAGAATGATTTTTGTATGATCAAGTGTTGGTTCCTTCTTGTATCTTTTGCTACAAATTCTTTCTTGTCTCTATATCATTTTTCTGACCTGCTGTTTTACATCGAACTGTCATGTGGAGTGCAGACAGGAGTTGCTCTTGGGATGGAGGTTGATGACAAAATGCCACAGCATGAATATTATGAGTATTTTGGTCCTGATTACACTCTGCATGTTGCTCCCAGTAATATGGAGAACAAAAATACACACCTTATGCTGGAAGAAATACAGGGAAAGCTACTTGAATACCTTGCACGACTTCAGCATGCGCCCAGTGTTCCATTTCAAGAAAGGCCTCCTGATACTGAACTCCCTGAGGCGGATGAAGACCAGGAGGATAAGGATGAGAGATGGGATCCAGACTCAGATATGGAAGTTGACGAAGAGAGAAAACCCATCCCAAGCAGAGTTAAAAGAGAAACGGTTGAGACTGAAATCAAAGAGCCGGAAGTTAATCCCGAGAGTACTAGAGGTTTAGAAAAAGCAGCTGCGGAGGCTACAAGTGCAAAGGTGAAAAATCTCCAGAAAATGGAAGCCATGAAATATTCTCTTTACAAGAAACCATCACTTTTAATTGAAATGATTTGTCTTAGAAGGTTCCCCCGGAGTTATTCTTCTTCTCTTGCTTTAGATATAGGTTCTCTCAAACTTGAAGAGTCGGGCGTAAAACTCGAAGAGCCCAGCAAGCAGAATGACCAAATGTTCCCCTACTTTGAACTATAA 1746 43.01 METGGNSLSSGPDGVKRKVSYFYDPEVGNYYYGQGHPMKPHRIRMTHALLAHYGLLQHMQVFKPLPARDKVLCRFHADDYVAFLKNITPETQQDQLRQLKRFNVGEDCPVFDGLYSFCQTYAGGSVGGAVKLNHKVCDIAVNWSGGLHHAKKCEASGFCYVNDIVLAILELLKHYERVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGYGKGKYYSLNVPLDDGIDDESYHYLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIKGHGECVRYMRSFNVPLLLLGGGGYTIRNVARCWCYEVHILLSKNDFCMIKCWFLLVSFATNSFLSLYHFSDLLFYIELSCGVQTGVALGMEVDDKMPQHEYYEYFGPDYTLHVAPSNMENKNTHLMLEEIQGKLLEYLARLQHAPSVPFQERPPDTELPEADEDQEDKDERWDPDSDMEVDEERKPIPSRVKRETVETEIKEPEVNPESTRGLEKAAAEATSAKVKNLQKMEAMKYSLYKKPSLLIEMICLRRFPRSYSSSLALDIGSLKLEESGVKLEEPSKQNDQMFPYFEL 581
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3387479 3392714 + CmoCh20G006870.1 Cmo20g00687 405004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00687 581 Pfam Histone deacetylase domain 36 326 IPR023801 -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 19 3 328 - -
Cmo20g00687 581 SUPERFAMILY Arginase/deacetylase 18 339 IPR023696 -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 19 369 520 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 465 496 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 444 464 - -
Cmo20g00687 581 Gene3D Histone deacetylase domain 15 435 IPR037138 -
Cmo20g00687 581 PRINTS Histone deacetylase signature 164 180 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 38 55 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 123 143 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 102 119 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 223 236 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 71 89 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PRINTS Histone deacetylase signature 240 258 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 3 328 - -
Cmo20g00687 581 PANTHER HISTONE DEACETYLASE 369 520 - -
Cmo20g00687 581 MobiDBLite consensus disorder prediction 433 499 - -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 177 192 IPR000286 -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 262 272 IPR000286 -
Cmo20g00687 581 PRINTS Histone deacetylase superfamily signature 145 168 IPR000286 -
Cmo20g00687 581 PIRSF HDAC_I_euk 366 521 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 PIRSF HDAC_I_euk 3 337 IPR003084 GO:0004407|GO:0016575
Cmo20g00687 581 CDD HDAC_classI 22 327 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo11g01384 Cmo20g00687 CCT
Cmo02g00305 Cmo20g00687 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01380 Cmo-Chr2:8190259 Cmo20g00687 Cmo-Chr20:3387479 2.66E-158 dispersed
Cmo10g00105 Cmo-Chr10:456335 Cmo20g00687 Cmo-Chr20:3387479 0 dispersed
Cmo11g00076 Cmo-Chr11:355753 Cmo20g00687 Cmo-Chr20:3387479 0 dispersed
Cmo13g00366 Cmo-Chr13:4695945 Cmo20g00687 Cmo-Chr20:3387479 8.88E-26 dispersed
Cmo20g00201 Cmo-Chr20:984159 Cmo20g00687 Cmo-Chr20:3387479 4.71E-162 dispersed
Cmo20g00687 Cmo-Chr20:3387479 Cmo10g00322 Cmo-Chr10:1445053 8.97E-27 dispersed
Cmo02g00305 Cmo-Chr2:1544517 Cmo20g00687 Cmo-Chr20:3387479 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00687 K06067 - csv:101214717 947.577