Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmo20g00834 ATGGCTACTTACTACTCGAGTTCGAATAACGAAAGGGATACTACTCCAATCCTCTATTCAAGGGGAGCTTTGCTCGGTTCGTATGAAGAAACAGCAGTTCTTCCACGGAATATGATGATGAATGCAAATTCTGGGACGTTCATGGATTCATTGTCTTCACAGGCGCAAAATGGTTGTAGTTCAATAACGCCCGTTGGAGCGGTTGGAGCTGCTCAACAGCAGCAGGAGTTCTTATCGAATCTTGGTGGTTCGCGAATTTCTGACCATGATTTCAATACATGGAGAGAGGATCGGAGTGAAATGCTTGGTACGAATTCGATGTGTGTTTCGACCAATGTTGTTCGTGGTGGGCAGAATTTGCAGGGTCAGGGGTTGTCCCTTACTCTGAGTACACAAATCCCATCTGGAATCCAAATGGCTTCAATCCCCTACAGAGACTCGGATGTCGGTTTAGCTTCATTCCTGAGGCCTAATCCGACTAGCTCGGGTGAGGATAGCTGCAGAAATGGCGCTTCTCGAGATGAACAATTGAGAAATGGAGAAAACTTGGCCAAGGGTGAATTAGCTCCTTACAGCATGTCTAGTATTGCAAGAACTATGCCTAATTCAAAGTACCTTAAGGCAGCACAGCAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCGAATAATGAGAGAGACCCGAGTTCTCACGAGCATGAAACTGGAACTGCCGAGAATGGCGATGCAGGAACTAAAAACGACACGTCGATGCAAACTGCAAGTGGAGTGTCTTCAAAACCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATACTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATAGTAGTATCATCATTTGATGTGATTGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCCATAGCTGGTCAAGTCAGAGCTACTCGTAAAAGCCTAGGAGAGCACGAGAATTCTGGAAACGACAAAGGAGTTGGAATCACTCGTCTTCGATACGTGGACCAGCAGTTAAGGCAACAGAGAGCTCTTCAGCAGCTTGGCATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTTGCGAGGCAGACGGGTTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGTGTGGACATGGACTCTATATCATCATCTGAAAATGCTAGCAAGGGAACAAAAGGAGATAACAAGACCTTCGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCGACCGAAAGATGTAGCACTGGAGATATTGTCGACTTAAAATCAGACCAAGTCTCTAATCTCGCAAACTCGGGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCCGAAAACGAGCTGATAAAGCCGAATGAGGAGCTAAGGTCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCTGCTGCTGCCGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTGGCGGGGTATCACTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGTGGCATACCTATGCCTGCTGGGACACACCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAACGCTGCTTCTGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTCGAATGCGTAAATGCTGCTGGGAATCCGCAACTGAGGTTCGGCCCTTCCCATCTTTATCACGATTTTGTTGTGTAA 2040 46.18 MATYYSSSNNERDTTPILYSRGALLGSYEETAVLPRNMMMNANSGTFMDSLSSQAQNGCSSITPVGAVGAAQQQQEFLSNLGGSRISDHDFNTWREDRSEMLGTNSMCVSTNVVRGGQNLQGQGLSLTLSTQIPSGIQMASIPYRDSDVGLASFLRPNPTSSGEDSCRNGASRDEQLRNGENLAKGELAPYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERDPSSHEHETGTAENGDAGTKNDTSMQTASGVSSKPQETGSNSTCELSHTEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENASKGTKGDNKTFEDDKEEDLQQSASSTATERCSTGDIVDLKSDQVSNLANSGSNRLASFQNGAHIEAENELIKPNEELRSNVNNSNFFPDAIVQSQGESDRFMAAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGGIPMPAGTHHGFAAMRGDDMYNAASAASSLGETVHFECVNAAGNPQLRFGPSHLYHDFVV 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4158381 4162304 + CmoCh20G008340.1 Cmo20g00834 405151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmo20g00834 679 MobiDBLite consensus disorder prediction 488 503 - -
Cmo20g00834 679 MobiDBLite consensus disorder prediction 244 279 - -
Cmo20g00834 679 Pfam Associated with HOX 201 348 IPR006563 -
Cmo20g00834 679 MobiDBLite consensus disorder prediction 224 281 - -
Cmo20g00834 679 SUPERFAMILY Homeodomain-like 400 467 IPR009057 -
Cmo20g00834 679 MobiDBLite consensus disorder prediction 475 517 - -
Cmo20g00834 679 Gene3D - 394 472 - -
Cmo20g00834 679 ProSiteProfiles 'Homeobox' domain profile. 396 459 IPR001356 GO:0003677
Cmo20g00834 679 MobiDBLite consensus disorder prediction 155 186 - -
Cmo20g00834 679 SMART HOX_1 399 463 IPR001356 GO:0003677
Cmo20g00834 679 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 95 631 - -
Cmo20g00834 679 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 95 631 - -
Cmo20g00834 679 MobiDBLite consensus disorder prediction 224 243 - -
Cmo20g00834 679 Coils Coil 281 301 - -
Cmo20g00834 679 CDD homeodomain 399 460 IPR001356 GO:0003677
Cmo20g00834 679 Pfam Homeobox KN domain 416 455 IPR008422 GO:0003677|GO:0006355
Cmo20g00834 679 SMART prehox3 194 349 IPR006563 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cmo02g00381 Cmo20g00834 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmo02g01345 Cmo-Chr2:8012929 Cmo20g00834 Cmo-Chr20:4158381 3.36E-92 dispersed
Cmo06g00525 Cmo-Chr6:2534813 Cmo20g00834 Cmo-Chr20:4158381 1.79E-95 dispersed
Cmo08g00640 Cmo-Chr8:4164456 Cmo20g00834 Cmo-Chr20:4158381 1.09E-104 dispersed
Cmo14g00358 Cmo-Chr14:1624151 Cmo20g00834 Cmo-Chr20:4158381 1.04E-103 dispersed
Cmo17g00824 Cmo-Chr17:7756250 Cmo20g00834 Cmo-Chr20:4158381 3.62E-102 dispersed
Cmo20g00164 Cmo-Chr20:823761 Cmo20g00834 Cmo-Chr20:4158381 1.34E-91 dispersed
Cmo02g00381 Cmo-Chr2:1948698 Cmo20g00834 Cmo-Chr20:4158381 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
11763 PF07526 POX 1.10E-50 No_clan Cmo TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmo20g00834 - - csv:101205137 1153.27