Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cmo20g00834 | ATGGCTACTTACTACTCGAGTTCGAATAACGAAAGGGATACTACTCCAATCCTCTATTCAAGGGGAGCTTTGCTCGGTTCGTATGAAGAAACAGCAGTTCTTCCACGGAATATGATGATGAATGCAAATTCTGGGACGTTCATGGATTCATTGTCTTCACAGGCGCAAAATGGTTGTAGTTCAATAACGCCCGTTGGAGCGGTTGGAGCTGCTCAACAGCAGCAGGAGTTCTTATCGAATCTTGGTGGTTCGCGAATTTCTGACCATGATTTCAATACATGGAGAGAGGATCGGAGTGAAATGCTTGGTACGAATTCGATGTGTGTTTCGACCAATGTTGTTCGTGGTGGGCAGAATTTGCAGGGTCAGGGGTTGTCCCTTACTCTGAGTACACAAATCCCATCTGGAATCCAAATGGCTTCAATCCCCTACAGAGACTCGGATGTCGGTTTAGCTTCATTCCTGAGGCCTAATCCGACTAGCTCGGGTGAGGATAGCTGCAGAAATGGCGCTTCTCGAGATGAACAATTGAGAAATGGAGAAAACTTGGCCAAGGGTGAATTAGCTCCTTACAGCATGTCTAGTATTGCAAGAACTATGCCTAATTCAAAGTACCTTAAGGCAGCACAGCAACTGCTTGATGAAGTTGTTAATGTCAGGAAAGCTTTGAAGCGACCGAATAATGAGAGAGACCCGAGTTCTCACGAGCATGAAACTGGAACTGCCGAGAATGGCGATGCAGGAACTAAAAACGACACGTCGATGCAAACTGCAAGTGGAGTGTCTTCAAAACCTCAAGAAACTGGGAGCAATTCAACATGTGAGCTCTCACATACTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTATCATCAGATGCAGATAGTAGTATCATCATTTGATGTGATTGCTGGATGTGGGGCATCTAAGCCATATACTGCACTTGCACTCCAGACTATATCCCGTCATTTTCGGTGCTTGCGGGATGCCATAGCTGGTCAAGTCAGAGCTACTCGTAAAAGCCTAGGAGAGCACGAGAATTCTGGAAACGACAAAGGAGTTGGAATCACTCGTCTTCGATACGTGGACCAGCAGTTAAGGCAACAGAGAGCTCTTCAGCAGCTTGGCATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTCCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGATTCTGATAAGATCATGCTTGCGAGGCAGACGGGTTTGACTAGAAGTCAGGTCTCTAATTGGTTTATCAATGCGCGTGTACGTCTTTGGAAACCTATGGTAGAGGAGATGTACAAGGAAGAAATAGGCAGTGTGGACATGGACTCTATATCATCATCTGAAAATGCTAGCAAGGGAACAAAAGGAGATAACAAGACCTTCGAGGATGATAAAGAGGAGGATCTGCAACAAAGTGCAAGTTCAACAGCGACCGAAAGATGTAGCACTGGAGATATTGTCGACTTAAAATCAGACCAAGTCTCTAATCTCGCAAACTCGGGTTCCAACAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCCGAAAACGAGCTGATAAAGCCGAATGAGGAGCTAAGGTCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGGAGAGAGTGACAGGTTTATGGCTGCTGCTGCTGCCGCCTATCACATGTCTGAATTGGGAAGGTTCGGGACGGTTGGCGGGGTATCACTTACGCTGGGTTTGCAGCATTGTGAGGGTGGTGGTGGCATACCTATGCCTGCTGGGACACACCATGGTTTTGCAGCCATGAGAGGAGACGATATGTACAACGCTGCTTCTGCAGCGTCTTCTCTCGGGGAAACGGTGCATTTCGAATGCGTAAATGCTGCTGGGAATCCGCAACTGAGGTTCGGCCCTTCCCATCTTTATCACGATTTTGTTGTGTAA | 2040 | 46.18 | MATYYSSSNNERDTTPILYSRGALLGSYEETAVLPRNMMMNANSGTFMDSLSSQAQNGCSSITPVGAVGAAQQQQEFLSNLGGSRISDHDFNTWREDRSEMLGTNSMCVSTNVVRGGQNLQGQGLSLTLSTQIPSGIQMASIPYRDSDVGLASFLRPNPTSSGEDSCRNGASRDEQLRNGENLAKGELAPYSMSSIARTMPNSKYLKAAQQLLDEVVNVRKALKRPNNERDPSSHEHETGTAENGDAGTKNDTSMQTASGVSSKPQETGSNSTCELSHTEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVSNWFINARVRLWKPMVEEMYKEEIGSVDMDSISSSENASKGTKGDNKTFEDDKEEDLQQSASSTATERCSTGDIVDLKSDQVSNLANSGSNRLASFQNGAHIEAENELIKPNEELRSNVNNSNFFPDAIVQSQGESDRFMAAAAAAYHMSELGRFGTVGGVSLTLGLQHCEGGGGIPMPAGTHHGFAAMRGDDMYNAASAASSLGETVHFECVNAAGNPQLRFGPSHLYHDFVV | 679 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 4158381 | 4162304 | + | CmoCh20G008340.1 | Cmo20g00834 | 405151 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 488 | 503 | - | - | |
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 244 | 279 | - | - | |
Cmo20g00834 | 679 | Pfam | Associated with HOX | 201 | 348 | IPR006563 | - | |
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 224 | 281 | - | - | |
Cmo20g00834 | 679 | SUPERFAMILY | Homeodomain-like | 400 | 467 | IPR009057 | - | |
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 475 | 517 | - | - | |
Cmo20g00834 | 679 | Gene3D | - | 394 | 472 | - | - | |
Cmo20g00834 | 679 | ProSiteProfiles | 'Homeobox' domain profile. | 396 | 459 | IPR001356 | GO:0003677 | |
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 155 | 186 | - | - | |
Cmo20g00834 | 679 | SMART | HOX_1 | 399 | 463 | IPR001356 | GO:0003677 | |
Cmo20g00834 | 679 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 95 | 631 | - | - | |
Cmo20g00834 | 679 | PANTHER | BEL1-LIKE HOMEODOMAIN PROTEIN 10 | 95 | 631 | - | - | |
Cmo20g00834 | 679 | MobiDBLite | consensus disorder prediction | 224 | 243 | - | - | |
Cmo20g00834 | 679 | Coils | Coil | 281 | 301 | - | - | |
Cmo20g00834 | 679 | CDD | homeodomain | 399 | 460 | IPR001356 | GO:0003677 | |
Cmo20g00834 | 679 | Pfam | Homeobox KN domain | 416 | 455 | IPR008422 | GO:0003677|GO:0006355 | |
Cmo20g00834 | 679 | SMART | prehox3 | 194 | 349 | IPR006563 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cmo02g00381 | Cmo20g00834 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cmo02g01345 | Cmo-Chr2:8012929 | Cmo20g00834 | Cmo-Chr20:4158381 | 3.36E-92 | dispersed | |
Cmo06g00525 | Cmo-Chr6:2534813 | Cmo20g00834 | Cmo-Chr20:4158381 | 1.79E-95 | dispersed | |
Cmo08g00640 | Cmo-Chr8:4164456 | Cmo20g00834 | Cmo-Chr20:4158381 | 1.09E-104 | dispersed | |
Cmo14g00358 | Cmo-Chr14:1624151 | Cmo20g00834 | Cmo-Chr20:4158381 | 1.04E-103 | dispersed | |
Cmo17g00824 | Cmo-Chr17:7756250 | Cmo20g00834 | Cmo-Chr20:4158381 | 3.62E-102 | dispersed | |
Cmo20g00164 | Cmo-Chr20:823761 | Cmo20g00834 | Cmo-Chr20:4158381 | 1.34E-91 | dispersed | |
Cmo02g00381 | Cmo-Chr2:1948698 | Cmo20g00834 | Cmo-Chr20:4158381 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
11763 | PF07526 | POX | 1.10E-50 | No_clan | Cmo | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cmo20g00834 | - | - | csv:101205137 | 1153.27 |