Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu08g1197 ATGACGGCACCGGTGTCAGTTGATGGGAAAGTGAAGAAGAATCTTGAGAATTTGGTGTCTGCTACTAAGTCTTTGAAGGCTAGTTTAGAGAAATCTAGGGCTTTAGGGTTTGCGTTGCAGAAAGCTGGGCCGAGATTTGAGGAGATTAGGCAAAGATTGCCAACTTTAGAAGCGGCGGTTCGGCCTATCCGTGCTGATAAGGAAGCCCTTGCCGCCGTCGGTGGCCATATACATCGGGCTGTTGGCCCTGCGGCGGCGGTGCTTAAGGTTTTTGATGCTGTTCATGGTCTTGAAAAGTCTCTGTTATCGGACCCGCGGAATGATCTCCCTGGATATTTGTCGGTGTTGAAACGTATGGAAGAGGCATTGAGGTTTTTAGGAGATAACTGTGGACTGGCAATCCAGTGGTTGGAGGACATTGTTGAGTATTTAGAAGATAATACTGTTGCTGATGAGAAATATCTAGCGAGTTTGAAGAATTCGTTGAAAAATCTTAGGGATTTGCAGAGTGATGAGGAGAGGACTCGGCTTGATGGGGGGCTTTTGAATGCTGCTTTAGATAAACTCGAGAACGAGTTTAGGCGGCTTTTAACAGAGCATAGTGTACCCCTTCCCATGTCTTCTTCGGCGTCTCTCGTTGAACAAGCTTGCATTGCTCCATCTCCATTGCCTGTGACTGTAATTCAGAAATTGCAAGCCATTCTTGGGAGATTGATTACTAATAAACGACTCGAGAGATGCATATCGATTTATGTTGAAGTTCGTAGTTCTAATGTTCGGGCTAGTTTGCAGGCTCTTGATTTGGATTACTTGGAGATATCGGTTTCCGAGTTCAATGATGTGCAGAGCATTGAAGGGTACATTGCAAAATGGGGAAAGCATTTGGAGTTTGCAGTGAAACACTTGTTTGAGGCTGAGTTCAAGCTTTGTAATGACGTTTTCGAGAGGATAGGATTGGATGTTTGGATGGGCTGTTTTGCAAAGATAGCAACTCAAGCAGGTATACTTGCATTTCTTCAATTTGGGAAAACTGTAACAGAAAGCAAGAATGATCCTATTAAGCTATTGAAGTTGTTAGATATATTTGCATCCTTGAACAAACTGAGACTAGACTTCAATAGGCTTTTTGGCGGGGCGGCCTGTTTGGAAATTCAAAACTTGACTAGGGATCTCATTAAGAGGGTTATCGATGGTACAGCCGAGATTTTCTGGGAGCTTCTAGTTCAGGTGGAGCTCCAGAGGCAAAATTCTCCACCTTTAGATGGGGCAGTTCCAAGGTTGGTTAGCTTCATTATTGATTACAGTAATAAACTGCTCAGTGATGATTATCGGCCGATCCTGACCCAAGCCCTCGTCATTCACCGGAGTTGGAAGAAAGAAAAGTTCCAAGAGGGTCTTCTTGTCAATGAGGTAACAAACCTTGTTAAAGCCATTGAGCAGAATCTGGAGACTTGGATCAAGGCTTATGAAGATTCTACCTTGTCAAATTTTTTCGCTATGAATAATCATTGGCATCTATACAAGCACCTCAAAGGAACAAAAGTCGGAGAACTAATGGGAGATAAACTAAAGGAACACGAACAATACAAGGATTACTATGCTGCAGTTTTCTTGAGGGATAGCTGGAGTAAACTTCCTAGCCATCTAAGCAGGGAGGGTTTGATTATGTTTTCAGGTGGGAGAGCTACTGCTCGTGATCTCGTCAAGAAACGTCTAAAGACATTCAATGAAGCTTTTGAAGACATGTATAAGAAGCAGTCAACCTGGGTTATATTTGACAAAGAACTGAGGGAGAAGACATGTCAACTTATAGTTCAAACCATCGTGCCCGTTTATCGCAGTTACATGCAGAATTACGGCCCCCTGGTCGAGCAAGACGCGAGTTCCAGTAAGTATGCGAAGTACACCGTGCAGAATCTGGAGAAAATGTTGCTGTCCCTATATCAGCCAAAGCCACTCAGGTACAGTAGCCTTAAAGTTAGGCAGACTAGTGGGAAATTCAGCAATGGCGCAATGGATCATCGTCGTTCCAACTCCATGGTTTTGTAA 2049 43.73 MTAPVSVDGKVKKNLENLVSATKSLKASLEKSRALGFALQKAGPRFEEIRQRLPTLEAAVRPIRADKEALAAVGGHIHRAVGPAAAVLKVFDAVHGLEKSLLSDPRNDLPGYLSVLKRMEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEKYLASLKNSLKNLRDLQSDEERTRLDGGLLNAALDKLENEFRRLLTEHSVPLPMSSSASLVEQACIAPSPLPVTVIQKLQAILGRLITNKRLERCISIYVEVRSSNVRASLQALDLDYLEISVSEFNDVQSIEGYIAKWGKHLEFAVKHLFEAEFKLCNDVFERIGLDVWMGCFAKIATQAGILAFLQFGKTVTESKNDPIKLLKLLDIFASLNKLRLDFNRLFGGAACLEIQNLTRDLIKRVIDGTAEIFWELLVQVELQRQNSPPLDGAVPRLVSFIIDYSNKLLSDDYRPILTQALVIHRSWKKEKFQEGLLVNEVTNLVKAIEQNLETWIKAYEDSTLSNFFAMNNHWHLYKHLKGTKVGELMGDKLKEHEQYKDYYAAVFLRDSWSKLPSHLSREGLIMFSGGRATARDLVKKRLKTFNEAFEDMYKKQSTWVIFDKELREKTCQLIVQTIVPVYRSYMQNYGPLVEQDASSSKYAKYTVQNLEKMLLSLYQPKPLRYSSLKVRQTSGKFSNGAMDHRRSNSMVL 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 24386472 24388520 + CmPI595203_08g011970.1 Cmu08g1197 422683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu08g1197 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 25 649 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cmu08g1197 682 Coils Coil 12 32 - -
Cmu08g1197 682 FunFam Exocyst subunit Exo70 family protein 137 654 - -
Cmu08g1197 682 Coils Coil 155 175 - -
Cmu08g1197 682 SUPERFAMILY Cullin repeat-like 87 648 IPR016159 -
Cmu08g1197 682 Pfam Exo70 exocyst complex subunit C-terminal 290 645 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cmu08g1197 682 Pfam Exocyst complex component Exo70 N-terminal 82 199 - -
Cmu08g1197 682 Gene3D Exocyst complex component Exo70 138 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu07g1605 Cmu-Chr7:31202037 Cmu08g1197 Cmu-Chr8:24386472 2.10E-34 dispersed
Cmu08g1197 Cmu-Chr8:24386472 Cmu09g0148 Cmu-Chr9:1649930 2.10E-178 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu08g1197 K07195 - csv:101207478 1278.08