Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmu10g1690 ATGGATCCAGAGACGCAAAATGATCAGTCAATACAAGAATACCTCCAAAAGATGCTCCCAAATACAAAGCGCGAATGTTACCTGCATTTAATCTCTGATGGGAAGGTAATATTGGAGGGGAAATCTAACTTCGCAAAAAAGCAGCCTTTATTGGATGCTATTACTACTGAATCTCTGAGGATGGGTGATAGTTTTAATCAATGGATGAGTAGAGAACTAGGAGATGTGAAGGAGGCAAGCATGCAGTCCAACTCTGGAACATACTGGAATAGTGTAGAAAATGACGTTGGACAGCTCTTTCACATTATTGATTTTTCACCAAGCTGGGCATATGAAGGTTCTGAAATCAAGGTTTTGGTATCAGGGAAGTTCTTGAAGAGTCCACATGAAGTGGAAAATCTTAAATGGTGTTGCATGTTTGGAGAGGTGGAAGTACCAGCTGATGTTATAGCAGATGGTGTATTGCGATGTTTTACTCCCATACACAAGGCTGGGAAGGTTCCCTTTTATGTTACACGTTCCAATAGATTAGCTTGTAGTGAAGTACGAGACTTTGAATACCGAGTTAAGTGCATACAAGATGTGGATGTAATGTACGATCATAGCATCAAAAATCAAGCACTTGTTTTGCGTTTTGTAAAATTAATATGCCTGAGCTGTTCAGACACTTTGATTGCTGATCCAAACAGCTCAAGTGACAGATCTGACTATAATAAAATCCGCAAATTGCTAGAGGTTGACAATAGTGAGTGGGATCAGTTGATAAAGCCTAGATGGGATGAGAGTGTTTCCCTTGAAAGTGCAAAAGAATTGCTGCTTCAAAGGCTACTTAAAGAGAAGCTACACGTATGGCTATTGCAAAAAGTCAGGGAAGGTGGGAGAGGCCCTAGCGTATTGGATGAGCAAGGTCAAGGCGTGATACATTTTGCTGCTGCACTTAACTATGATTGGGCCCTTCTACCAGCATTAGTTGCTGGTATAAATGTCAATTTTCGTGATGCAAATGGATGGACAGCACTACATTGGGCTGCATTCTTTGGCAGAGAGCGTACAGTCGCTGCCCTCATCTCTCTGGGTGCAGCTCCTGGAGCACTGGCAGATCCAAGCCTCAAGTATCCATCTGGCAGAACTCCTGCTGATTTAGCATCCTCAAATGGGCACAAAGGAATTGCTGGTTATCTTGCTGAGTCGGTGCTAAGCGCACACTTGGAATCTCTGAATTTTGATAATCAAGAAAGTAAGGCTGCAGATACTTGTGGAGAAAAAGCAGTACAAACAGCTGCTGAGCGTGTCCCCACTCCACACGAGGGCAATGATATGTATACATTGTCCCTCAAGGATTCATTAGCAGCCATATCTAATGCTACCCAAGCTGCTGCTCGTATTCACGAGGTTATGAGGGTGCAGTCCTTCCAAAGAAAGCAATTGGAGGTGAACGATAAATTCGACGTTTCAAATGATCAGGCTTTTTCACTTTTACCAGTTAAGAGACGTAATCCGGGATCACATGATGATGAGCATGCTGCTGCCATTCACATACAAAACAAGTTCCGCAGTTGGAAGGGCAGAAAAGATTTTCTAATAGTCCGACAGAGAATTGTTAAAATTCAGGCCCATGCAAGAGGCCATCAGGTGCGAAACAACTATCGGAAAATTTTGTGGTCAGTGGGAATTTTGGAGAAGGTTATTTTGCGTTGGAGAAGAAAAGGAAGTGGTTTACGAGGATTTAGGCCAGAAGCAACTGCTGAGGACTGCAGTAGGCAAAATACATCGTTGACAGAGGATGATGACGACTTTTTAAAACAAGGCAGAAAGCAAATAGAAGAAAGGTTGCAGAAGGCTCTTGCTAGAGTCAAGTCTATGGTGCAATATCCTGAGGCAAGGGATCAATATCGCAGGCTGTTAAATGTTGTCATGGAGATGCAAGATATAAAGGTGAAAGATGGTGTTCTAGACAATGTAGATGAAACAGATGACTTTGATGACCTAATTGACATTAAAGCCCTATTGGATGAAGATGCTTCCACTCCTACTGCATCGGTGTAA 2046 42.52 MDPETQNDQSIQEYLQKMLPNTKRECYLHLISDGKVILEGKSNFAKKQPLLDAITTESLRMGDSFNQWMSRELGDVKEASMQSNSGTYWNSVENDVGQLFHIIDFSPSWAYEGSEIKVLVSGKFLKSPHEVENLKWCCMFGEVEVPADVIADGVLRCFTPIHKAGKVPFYVTRSNRLACSEVRDFEYRVKCIQDVDVMYDHSIKNQALVLRFVKLICLSCSDTLIADPNSSSDRSDYNKIRKLLEVDNSEWDQLIKPRWDESVSLESAKELLLQRLLKEKLHVWLLQKVREGGRGPSVLDEQGQGVIHFAAALNYDWALLPALVAGINVNFRDANGWTALHWAAFFGRERTVAALISLGAAPGALADPSLKYPSGRTPADLASSNGHKGIAGYLAESVLSAHLESLNFDNQESKAADTCGEKAVQTAAERVPTPHEGNDMYTLSLKDSLAAISNATQAAARIHEVMRVQSFQRKQLEVNDKFDVSNDQAFSLLPVKRRNPGSHDDEHAAAIHIQNKFRSWKGRKDFLIVRQRIVKIQAHARGHQVRNNYRKILWSVGILEKVILRWRRKGSGLRGFRPEATAEDCSRQNTSLTEDDDDFLKQGRKQIEERLQKALARVKSMVQYPEARDQYRRLLNVVMEMQDIKVKDGVLDNVDETDDFDDLIDIKALLDEDASTPTASV 681
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19316348 19320182 - CmPI595203_10g016900.1 Cmu10g1690 427220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cmu10g1690 681 Gene3D Immunoglobulins 95 191 IPR013783 -
Cmu10g1690 681 Gene3D - 504 553 - -
Cmu10g1690 681 ProSiteProfiles Ankyrin repeat region circular profile. 335 360 - -
Cmu10g1690 681 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 556 IPR027417 -
Cmu10g1690 681 ProSiteProfiles Ankyrin repeat profile. 335 367 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 ProSiteProfiles IQ motif profile. 506 535 - -
Cmu10g1690 681 Gene3D - 226 398 IPR036770 -
Cmu10g1690 681 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 41 640 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cmu10g1690 681 Pfam IQ calmodulin-binding motif 507 526 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 Pfam IQ calmodulin-binding motif 531 550 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 SUPERFAMILY Ankyrin repeat 281 396 IPR036770 -
Cmu10g1690 681 ProSiteProfiles IQ motif profile. 530 553 - -
Cmu10g1690 681 SMART ANK_2a 374 403 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 SMART ANK_2a 335 364 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 SMART iq_5 505 527 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 SMART iq_5 528 550 IPR000048 GO:0005515(InterPro)
Cmu10g1690 681 FunFam Calmodulin-binding transcription activator 2 505 553 - -
Cmu10g1690 681 SUPERFAMILY E set domains 102 188 IPR014756 -
Cmu10g1690 681 Pfam Ankyrin repeats (3 copies) 308 397 IPR002110 GO:0005515(InterPro)
Cmu10g1690 681 FunFam Calmodulin-binding transcription activator 2 95 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmu06g0452 Cmu-Chr6:5098588 Cmu10g1690 Cmu-Chr10:19316348 6.00E-80 dispersed
Cmu09g1524 Cmu-Chr9:28489002 Cmu10g1690 Cmu-Chr10:19316348 9.30E-144 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmu10g1690 K21596 - vvi:100247418 787.334