Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone19ag0918 ATGACCCTCTACATGCCCTTGTTCAGAATCAGCACCACCATGAAAACCTTAACTCAGCTCCATGCCCACCTCTTCGTCACCGGCTTCCATAGAGACCCACTCCCTTCCACAAAGCTCATCGAATCCTATGCCCAATTAAACTCCCTCAAATCTTCCCGATCAGTCTTCCATACCTTCCCTTCTCCCGATTCTTTCATGTGGGGCGTTCTGATCAAATCTTACGTCTGGAACCACATCTTCCACGAAGCAATTTCACTCTTCCATCAAATGCTTCATAGTCAAGTTCAACTCAATAAGTTCATTTTCCCGTCGATTCTAAGAGCTTGTTCTGGTTTTAATGATCTAGGCATTGGGGAAAAGATACATGGAATGATAATTAAAGCTGGGTTTGATGATGATTCTATAGTGGAAACCTCCTTGCTTAGTATGTATGGTGAATTAGGTTATTTACATAATGCATGGAAGGTGTTTGATGAAATGCGTGGAAGAGATGTGATTTCTTGGAGTTCGATTATTTCCTGTCTTGTTGAGAATGAAGATCTAATTGAAGGCTTAGAGATCTTCCGTTTGATGCTTTCTGAAGGGATTGAGCCGGATTCAGTTGTGATGCTTAGCATGGCAGATGCTTGTGGTGAATCGGGTTCACTGAATTTAGCGAGATCAATTCATGGATATGTCTTGAGAAAGAGAATCGAAAATGATGAATCATTGAGCAATTCATTGATAGTAATGTATACTAGGTGTGGTGAAGTGCATAGTGCAGAGAAAGTTTTCGAGAACTTTAATTGTCGAAGAAATACCGCTTCTTGGACTTCTATGATATCTTGCTACAATCAAGCTGGTTCTTTTCAGAAAGCAATAGATGTTTTCATTGCAATGCAAGAGTCGGAAGTTGAACCCAATTCAGTAACCTTGATGAGTATTTTGTCATCCTGTGCTCGGTTAGGTTTGCTCAAAGAAGGGAAATCAGTTCATTGTTTTGTGATAAGAGCTGATATTGATCCAGGATATGAGTTTCTAGGACCGGTTTTACTTTCGTTATATGCTAACTCTGTGGATCAAGGTGTTTGTGAGAAGATTCTTGGTTTGATAGAGAAGAGAGATGTTATAACATGGAATATGATGATTTCGATTAATGTTCAGAAGGGTCTGTTAAAAGATGCATTACTGACCTTTGCACATATGCAGAACAGAGGATTAATGCCTGATTCATTTGGTCTAGCCAGTTCTCTATCAGCTTCTGGAAATGTTGGGCAAATAGAGCTCGGGCAGCAAATTCATGCTCATATCATAAAGAGAAGATATATTGATGAATATGTTCAGAATTCACTAATAGACATGTATTCTAAATGTGGTTTTGTGAATCTAGCATACATGATATTTAAGAACATAGAATCAAAAAGCATAGTTACATGGAATTCTATGTTGTCAGGATTTTCTCAGAATGGTAATTCAGTTGAAGCGGTTGGCTTATTTGACAAAATGTATTCAAACCAGCTCGAGATGAATGAAGTTACCTTCTTGAGTGTGATTCAAGCTTGCTCTTCTTTAGGATATCTTGAGAAGGGGAAATGGGTTCACCATAAACTCATTATAAATGGTGTAAGAGAAGATCTTTATATTGAAACGGCTCTTACCGACATGTATGCTAAATGCGGAGATCTCCGAACTGCACAGTCTGTTTTTGATATCATGTCAGAAAGAAGTGTGGTATCATGGACTACAATGATTGCTAGTTACGGGGTCCACGGTAAGATTGATGATGTCATCTCACTCTTTGATCAGATGCTAAAATCCGGGATTAAACCAAATGATGTTACCTTCATGAATGTTATTTCAGCTTGTAGTCATGCTGGGTTGGTCAAAGAAGGGAAGTTGTATTTCAATTCCATGAGACAATTTGGGATTGAACCCAAAACAGAGCATTTTGCATGTATGGTAGATCTTCTTAGTCGTTCTGGTGATCTTAGTGGAGCATACGAAATCATCAAATCAATGATGTCATCACCTCTTGATGCTAGCATTTGGGGCACTTTGCTAAATGGGTGTCGGATTCATCAAAGAATGGATATTATTAAGAGGATTGAAAAGGACATATTTAGTAAGAAAACTGATGATACAGGGTACTATACATTATTGTCAAATATATATGCAGAAGGAGGAGAGTGGCTTGAATTTAGAAAGGTTAGGTCAATAATGAAAGGTACGGGTCTGAAGAAGGTGCCAGGATATAGCACAATAGAGCTTCATAAACGGGTTTATAGATTTGGAGCTGGAGATACTTGTCATTCAGAAACAGAGCAAATCAATAGAGTTTTAGAATCTTTTCAGAATTTAGCTCAGGAAGATTGTTCCTAA 2358 38.38 MTLYMPLFRISTTMKTLTQLHAHLFVTGFHRDPLPSTKLIESYAQLNSLKSSRSVFHTFPSPDSFMWGVLIKSYVWNHIFHEAISLFHQMLHSQVQLNKFIFPSILRACSGFNDLGIGEKIHGMIIKAGFDDDSIVETSLLSMYGELGYLHNAWKVFDEMRGRDVISWSSIISCLVENEDLIEGLEIFRLMLSEGIEPDSVVMLSMADACGESGSLNLARSIHGYVLRKRIENDESLSNSLIVMYTRCGEVHSAEKVFENFNCRRNTASWTSMISCYNQAGSFQKAIDVFIAMQESEVEPNSVTLMSILSSCARLGLLKEGKSVHCFVIRADIDPGYEFLGPVLLSLYANSVDQGVCEKILGLIEKRDVITWNMMISINVQKGLLKDALLTFAHMQNRGLMPDSFGLASSLSASGNVGQIELGQQIHAHIIKRRYIDEYVQNSLIDMYSKCGFVNLAYMIFKNIESKSIVTWNSMLSGFSQNGNSVEAVGLFDKMYSNQLEMNEVTFLSVIQACSSLGYLEKGKWVHHKLIINGVREDLYIETALTDMYAKCGDLRTAQSVFDIMSERSVVSWTTMIASYGVHGKIDDVISLFDQMLKSGIKPNDVTFMNVISACSHAGLVKEGKLYFNSMRQFGIEPKTEHFACMVDLLSRSGDLSGAYEIIKSMMSSPLDASIWGTLLNGCRIHQRMDIIKRIEKDIFSKKTDDTGYYTLLSNIYAEGGEWLEFRKVRSIMKGTGLKKVPGYSTIELHKRVYRFGAGDTCHSETEQINRVLESFQNLAQEDCS 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 7103230 7105587 + Conep19aG0094500.1 Cone19ag0918 459355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 543 756 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 10 111 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 468 502 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 569 603 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein At5g39350 family 218 331 - -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein 73 217 - -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 604 638 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 63 97 IPR002885 -
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 113 215 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Cone19ag0918 785 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 370 400 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 645 669 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 239 259 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 65 93 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 138 164 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat 166 196 IPR002885 -
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 413 536 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Gene3D Tetratricopeptide repeat domain 216 338 IPR011990 GO:0005515(InterPro)
Cone19ag0918 785 Pfam PPR repeat family 468 515 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat family 266 314 IPR002885 -
Cone19ag0918 785 Pfam PPR repeat family 569 616 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 571 604 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 166 200 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 470 503 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 606 638 IPR002885 -
Cone19ag0918 785 NCBIfam pentatricopeptide repeat 269 301 IPR002885 -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein, chloroplastic 540 766 - -
Cone19ag0918 785 FunFam Pentatricopeptide repeat-containing protein 422 524 - -
Cone19ag0918 785 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 293 404 - -
Cone19ag0918 785 Pfam E motif 705 748 IPR046848 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0918 Cone-Chr19:7103230 Cone6ag1117 Cone-Chr6:7116784 1.30E-152 dispersed
Cone19ag0918 Cone-Chr19:7103230 Cone19ag0919 Cone-Chr19:7105597 2.77E-111 tandem
Cone13ag0924 Cone-Chr13:8049463 Cone19ag0918 Cone-Chr19:7103230 5.87E-151 transposed
Cone1ag1709 Cone-Chr1:57997454 Cone19ag0918 Cone-Chr19:7103230 3.30E-149 transposed
Cone13ag0923 Cone-Chr13:8048299 Cone19ag0918 Cone-Chr19:7103230 2.51E-134 wgd
Cone13ag0072 Cone-Chr13:439937 Cone19ag0918 Cone-Chr19:7103230 1.66E-113 wgd
Cone16ag0192 Cone-Chr16:1252437 Cone19ag0918 Cone-Chr19:7103230 1.50E-38 wgd
Cone19ag0918 Cone-Chr19:7103230 Cone7ag0484 Cone-Chr7:2223057 2.31E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone19ag0918 - - - 0.0