Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00404 ATGGAGCCTATAGCAGAAAGAGAATGGATCTCTGAGGAATCTGATTTCATGGCTAATTTGCTCAGTAATTACTGTCTCCCAAATGAGCTAAGCTCAGATTTGAGCTTGGAAATCCCTTGTGCTTATTGGGAATCCAATGAACCACCATCACTGTCCATGGCAGCCATGGATGAACCTTCTTATTATTCTTCAGATTCCCTCCCTCTTTGGCTGCCTAATGGTGCTTCTTTGTCCTTGGATTTCTCGATGGAGGATGATCGCTTGGACGACAACGGTTCGAGTCGAAAAACAAGGCAATGTAGGCTGCAACACTCCCTTGCTGACCCTGCTGCTGCTACTGCTGTTGCTGTCAATGGGAAAAAGAGGAAAGCTGAGATACATGAGAAAGTTGCATCGATGTCGGTCGTCGAGAACTCGAAGAAGAGGAACGCAAGGCCACCGAAGATCATGAAGCTTGGTTCGGCTAGCTGCAATGAAGAGGATCACATTGGTCAGTGCACAAGTAGCTTCAGCTCTGAGGAGTCTCAAGAAATCAATGGTGGAATTAGTTCAAGTTCAAGCTCAAAAGGGTCTGCCTCTTTGACCTCAAATGGGAAGCCAAGAGCTAGTAGAGGCTCAGCCACTGACCCTCAAAGCCTTTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGGTTGAAGATCTTACAAAGCCTCGTCCCAAATGGCACGAAGGTTGATATCAGTACAATGCTTGAAGAAGCCGTTGAATATGTGAAGTTCTTGCAGCTTCAAATCAAGCTGTTGAGCTCTGATGATCTATGGATGTATGCACCAATTGCTTACAATGGAATGGATATTGGACTTAACTTGAAGCTCATGAAGCAAGACAATGCATCACAGTAG 885 44.86 MEPIAEREWISEESDFMANLLSNYCLPNELSSDLSLEIPCAYWESNEPPSLSMAAMDEPSYYSSDSLPLWLPNGASLSLDFSMEDDRLDDNGSSRKTRQCRLQHSLADPAAATAVAVNGKKRKAEIHEKVASMSVVENSKKRNARPPKIMKLGSASCNEEDHIGQCTSSFSSEESQEINGGISSSSSSKGSASLTSNGKPRASRGSATDPQSLYARKRRERINERLKILQSLVPNGTKVDISTMLEEAVEYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQ 294
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2341237 2342373 - Cp4.1LG01g02530.1 Cpe01g00404 461717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00404 294 Pfam Helix-loop-helix DNA-binding domain 216 256 IPR011598 GO:0046983
Cpe01g00404 294 MobiDBLite consensus disorder prediction 165 216 - -
Cpe01g00404 294 MobiDBLite consensus disorder prediction 165 210 - -
Cpe01g00404 294 CDD bHLH_AtIND_like 207 269 - -
Cpe01g00404 294 SMART finulus 212 261 IPR011598 GO:0046983
Cpe01g00404 294 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 122 288 - -
Cpe01g00404 294 Gene3D - 208 264 IPR036638 GO:0046983
Cpe01g00404 294 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 122 288 - -
Cpe01g00404 294 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 206 272 IPR036638 GO:0046983
Cpe01g00404 294 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 206 255 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00404 Cpe04g00326 CCT
Cpe01g00404 Cpe15g00442 CCT
Cpe01g00404 Cpe15g00442 ECH
Cpe01g00404 Cpe04g00326 ECH
Cpe01g00404 Cpe14g00269 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00404 Cpe-Chr1:2341237 Cpe15g00442 Cpe-Chr15:5543153 3.65E-42 dispersed
Cpe01g01994 Cpe-Chr1:17028190 Cpe01g00404 Cpe-Chr1:2341237 9.99E-10 dispersed
Cpe01g00404 Cpe-Chr1:2341237 Cpe11g00124 Cpe-Chr11:681069 2.08E-52 wgd
Cpe01g00404 Cpe-Chr1:2341237 Cpe14g00269 Cpe-Chr14:1556221 9.38E-120 wgd
Cpe01g00404 Cpe-Chr1:2341237 Cpe15g00441 Cpe-Chr15:5540508 1.09E-19 wgd
Cpe01g00404 Cpe-Chr1:2341237 Cpe04g00326 Cpe-Chr4:4005182 1.03E-48 wgd
Cpe01g00404 Cpe-Chr1:2341237 Cpe06g00195 Cpe-Chr6:1046524 4.63E-53 wgd
Cpe01g00404 Cpe-Chr1:2341237 Cpe07g00514 Cpe-Chr7:3391186 2.25E-27 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48746 PF00010 HLH 6.70E-10 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00404 - - mcha:111017743 365.925