Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe01g00450 ATGAATCGTGGTAGACCAAGGAAGGAGAAGCTGTTTAGGAGAAAATCTTGGGCCTCAATAACACCACCGGGTACCAGTTATGGTCAAGAAGCGGCGGTTCAAAGCTTTTCACTCCCTAGAAGTGTAAAATTCAAAAGAACGACCATTGATAGCATATACAATGATCGCCAATCTCGTTCCATTGTTATGGCACAAGCAAAGGAGGTTCAAGCAAAACTGCCCCCTGGTTTTCCCAGTTTTATTAAGGTTATGCTCCCATCACATATCACCGGAGGATTTTGGCTGGGTCTTCCAAGGGGATTCTGTGATAGCCATTTGCCAAGGCAGGATACTGCAATGATCTTACAAGATGAAAATGGAATGGCATATCAAACAAAGTATCTATCTGAAAAAACAGGGTTGAGTGCTGGATGGAGAGGTTTCTCACTGGCTCACAACTTACAGCAAGGAGATGTTCTAGTTTTCCATTTGGTTATGCCTAACAAGTTTATGGTTTACATTGTGAGATCCAATGCTGCTGTAGCTGAGGATGGTGGTGCTCCAGGCTTTGAACGTAGGGCCTACAATAAACAAACACCTCTTTATGGCAAAGAAAATGTTCCTTATATGAAGGAGAAACAAATGGCCCTTGACAATGTAAATGGCAAAGAGGCAGACATCCATCCCGTGAAAAATGAAGAAGACGACAATCCCGTCTCCCTTGCAATAGATATCCATAAAGATCACGGGCAAACAAGTGGTCCTGTGCATAAAGATACTGAGATGATGCCTGTGCTAGAAGAGTCTGAAAACAACAGAAACAGTTTTGGTTCCAACTCTATGAACGGAATTCAATTATCGAACTATACTCCAGATTTCGACAAAGTGAAGAGTTTGAATGATTTCATCATTTCAGTCAATGGCTTGGTCATCGACTCCGAGTTCTCCAGTCACTTTAGAGCGAAATACTTCGAGCTATGCTCTAGTCAGAAAGCATTTCTTCACGCGCATATCCTCGAGGGTCTGAACTACAAACTTGTTTCAGGAATTATATCAGAGACCATCAACATAGCTGATGCCATTAGAGCATGCAAGGTTGGCATCACCTCACAAGAACATTATACTACTTGGGACAAAAGTCTGACAGCCTTTGAAGGTCTAGGAATGAACGTAGCGTTTCTTCGATCTCGAATCTATCGATTACTGACTCTCTCAATAAAAATAGAGATGAAAAGAAAAATGGAGCTGAAACGGGACTCAACACAGGAGGAAATACGAACGCTCGTAGCGAAAATCATGGAAGCAAGAGCAGCTGTAAAGCAACTAGAAGCTGAAATTCAGTGTCTAGAGAACACTGATGGTGGGAATATGGAGGCATTGTTCAAGGAAGTGGCCAGCGCCCCTTGGTAG 1389 42.69 MNRGRPRKEKLFRRKSWASITPPGTSYGQEAAVQSFSLPRSVKFKRTTIDSIYNDRQSRSIVMAQAKEVQAKLPPGFPSFIKVMLPSHITGGFWLGLPRGFCDSHLPRQDTAMILQDENGMAYQTKYLSEKTGLSAGWRGFSLAHNLQQGDVLVFHLVMPNKFMVYIVRSNAAVAEDGGAPGFERRAYNKQTPLYGKENVPYMKEKQMALDNVNGKEADIHPVKNEEDDNPVSLAIDIHKDHGQTSGPVHKDTEMMPVLEESENNRNSFGSNSMNGIQLSNYTPDFDKVKSLNDFIISVNGLVIDSEFSSHFRAKYFELCSSQKAFLHAHILEGLNYKLVSGIISETINIADAIRACKVGITSQEHYTTWDKSLTAFEGLGMNVAFLRSRIYRLLTLSIKIEMKRKMELKRDSTQEEIRTLVAKIMEARAAVKQLEAEIQCLENTDGGNMEALFKEVASAPW 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 2603336 2607895 - Cp4.1LG01g01950.1 Cpe01g00450 461763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe01g00450 462 CDD B3_DNA 78 169 IPR003340 GO:0003677
Cpe01g00450 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS01G0234100 49 358 - -
Cpe01g00450 462 Coils Coil 404 445 - -
Cpe01g00450 462 ProSiteProfiles B3 DNA-binding domain profile. 80 171 IPR003340 GO:0003677
Cpe01g00450 462 SUPERFAMILY DNA-binding pseudobarrel domain 74 171 IPR015300 -
Cpe01g00450 462 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 358 IPR044837 -
Cpe01g00450 462 SMART B3_2 80 171 IPR003340 GO:0003677
Cpe01g00450 462 Gene3D - 57 172 IPR015300 -
Cpe01g00450 462 Pfam B3 DNA binding domain 80 170 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00450 Cpe04g00274 CCT
Cpe01g00450 Cpe04g00274 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g00450 Cpe-Chr1:2603336 Cpe16g00019 Cpe-Chr16:251196 1.22E-10 dispersed
Cpe05g01126 Cpe-Chr5:7613215 Cpe01g00450 Cpe-Chr1:2603336 8.07E-83 transposed
Cpe01g00450 Cpe-Chr1:2603336 Cpe15g00494 Cpe-Chr15:5895248 1.32E-41 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe02g00152 Cpe-Chr2:782926 2.95E-09 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe04g00274 Cpe-Chr4:3411573 8.58E-44 wgd
Cpe01g00450 Cpe-Chr1:2603336 Cpe07g00470 Cpe-Chr7:3015036 2.87E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48750 PF02362 B3 4.40E-15 CL0405 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe01g00450 - - cpep:111802574 914.45