Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe02g00094 | ATGGGCTTTCCAGTTAAGTTTCAGAAAGTTTCGGAGATGAAGATTCAGTGCGACGTCTGCAACAAAGACGAGGCGCTGCTTTTCTGCACCGCCGACGACGCCGCCCTATGCTCCACCTGCGACCACAGCGTCCACCACGCCAACGTCCTCGCCTCCAAGCACCTCCGCTTCCCCCTCCTCCACCCCAACAACAACAATTTCCCACTCTGCGACATCTGCCAGGAGAGACGAGCGTTCCTATTCTGTCAGCAGGACCGGGCGATTCTATGCAAAGACTGCGACTTTCCAATCCATTCGGTGAATGAGCTTACCCAGAAGCACGATCGGTTCCTTCTCACCGGCGTGAAGCTCTCGTGTGTGTCTGCCGGGAATGTGCCGTCGTCTTCCTCTATGTCCGAGAAGATGGCTAATGCTTCTTCTGCCCCTGTTTCGAATTCGCCTTCAATTGCGGAGAGTTCAACTTCTAACGCTCAGACGGTGGGTGCGTCCACCGATGGGTGTGAGGCGATGAATGGTGTGGAGTATTTTATTGACGCGATTTCAGGGTGGCATTTTGATGACTTTCTTGATTCTTCCTCTACCGATGCTCCTCCTTTTGGTTTCTGTAAGCTGCAGAGCGATGAGGTTGATGGTGATTGGGTTTTTCAATTTGTTGATGATTTAGTTGAATTAGAAACGAGCGCGGATTCTTTCTCGTCGGAGGATTGGGGAATTTGGAGCCCTGAGGAGGAGGCTGCCGTACCTCTGTTTTGCTCAGAGATTGAGATGGCGGAAAGGAAGAAAGGTAGAACCTTGAAGGAGAAAACCAGAGGAGGAGGAGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGACGGTGGGATTTCGGTGCCGGAGGTTGATCTCCGGCCGAGAAGATTCAGATCCTCTTGA | 909 | 52.81 | MGFPVKFQKVSEMKIQCDVCNKDEALLFCTADDAALCSTCDHSVHHANVLASKHLRFPLLHPNNNNFPLCDICQERRAFLFCQQDRAILCKDCDFPIHSVNELTQKHDRFLLTGVKLSCVSAGNVPSSSSMSEKMANASSAPVSNSPSIAESSTSNAQTVGASTDGCEAMNGVEYFIDAISGWHFDDFLDSSSTDAPPFGFCKLQSDEVDGDWVFQFVDDLVELETSADSFSSEDWGIWSPEEEAAVPLFCSEIEMAERKKGRTLKEKTRGGGGGGGGGGGGGDGGISVPEVDLRPRRFRSS | 302 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 475486 | 476908 | - | Cp4.1LG02g07680.1 | Cpe02g00094 | 464043 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe02g00094 | 302 | Gene3D | Classic Zinc Finger | 13 | 107 | - | - | |
| Cpe02g00094 | 302 | Pfam | B-box zinc finger | 68 | 108 | IPR000315 | GO:0008270 | |
| Cpe02g00094 | 302 | Pfam | B-box zinc finger | 15 | 54 | IPR000315 | GO:0008270 | |
| Cpe02g00094 | 302 | CDD | Bbox1_BBX-like | 69 | 112 | - | - | |
| Cpe02g00094 | 302 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 13 | 253 | - | - | |
| Cpe02g00094 | 302 | MobiDBLite | consensus disorder prediction | 126 | 161 | - | - | |
| Cpe02g00094 | 302 | ProSiteProfiles | Zinc finger B-box type profile. | 12 | 59 | IPR000315 | GO:0008270 | |
| Cpe02g00094 | 302 | CDD | Bbox1_BBX-like | 17 | 59 | - | - | |
| Cpe02g00094 | 302 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 13 | 253 | - | - | |
| Cpe02g00094 | 302 | SMART | bboxneu5 | 65 | 112 | IPR000315 | GO:0008270 | |
| Cpe02g00094 | 302 | SMART | bboxneu5 | 12 | 59 | IPR000315 | GO:0008270 | |
| Cpe02g00094 | 302 | MobiDBLite | consensus disorder prediction | 261 | 302 | - | - | |
| Cpe02g00094 | 302 | ProSiteProfiles | Zinc finger B-box type profile. | 65 | 112 | IPR000315 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe02g00094 | Cpe07g00385 | CCT | |
| Cpe02g00094 | Cpe07g00385 | ECH | |
| Cpe02g00094 | Cpe11g00234 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe02g00094 | Cpe-Chr2:475486 | Cpe04g00107 | Cpe-Chr4:966757 | 6.86E-51 | dispersed | |
| Cpe10g00649 | Cpe-Chr10:3738125 | Cpe02g00094 | Cpe-Chr2:475486 | 2.23E-20 | wgd | |
| Cpe11g00234 | Cpe-Chr11:1265779 | Cpe02g00094 | Cpe-Chr2:475486 | 8.97E-56 | wgd | |
| Cpe16g00269 | Cpe-Chr16:4700975 | Cpe02g00094 | Cpe-Chr2:475486 | 5.09E-49 | wgd | |
| Cpe02g00094 | Cpe-Chr2:475486 | Cpe07g00385 | Cpe-Chr7:2483126 | 9.58E-59 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 48971 | PF00643 | zf-B_box | 1.30E-06 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe02g00094 | - | - | mcha:111007828 | 325.094 |