Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe02g00239 | ATGGGTGATCTCGAAAATGACGAAATGGGTTTTCGAAATTCGAGTGATGGGTTACTGAATTGTCCATCTTCGGATAGAACTTCAGTAACAATGGCGATGGGTTCGTTTTATGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAGCTTTGGAGCTGCTTCAATGGCTTCCTCACATCGAGATTTTTCAAATTCCTTTCCTATTGTTTTGGAGAATCATCATCATGGAGGAGGAAGTGGCACATCACAGACTGTTCAATATCCGACAGATTTAGAGATGGGTACGAAGTTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTCGGTTCTTTTGGTCTTGCTGATCAGATTCTTGGAGGGTGTTCTTCAAGTTACAGAAATGGAGGAACTGCCAACACTGCTCAAACATCACAAGAAACTTTACCACCACCATCTGGTGAAGAAGCTGCATTAGGTTCACCAAATGGTAAAATCAGAAAACGAGCCCTTGATTCCGCCTTCCCATTTAGCTCAAATACGAAATCTGAAGGGAAAGTGAAAAAAGATGTTTCTGGGGAAAGTTCGAGTACACAAGAAGAGAAAAATCCAGAAATGGAACAGAATTTACGAAGTGGAAAACAAGCTAAAGAGAAGTCCAGTAACAGTGGAGAAGCTCCCAAGGAAAATTATATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAAGCTGTAATGCTTGATGAAATTATAAACTATGTTCAATCACTGCAACAACAGGTTGAGTTTTTGTCGATGAAACTTGCTACTGTCAACCCCGACATGAACATCGATCTCGAGCGGATTTTATCCAAAGATATTTTCCAGGTACGAGGCAGCAATGGAAGTGTTCTAGGATTTGATCATCCTGGGATGAGCGCAGCTCCTCCGGTCGTCCCCGCTCACCGGATGTTTCAGTTTCAGGGGATGATGTCGAATATGGCATCCACATCCACATCCACGCAGTTTCCTTCTTTACCTCAGACGATGTTGGAAAGTGATATCCAAACTCTTCTTCAAATGGGTTTCGATTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGTAGGGTTCATAATCTAATAGCTTTGCATTCTGAACTTCCAGATGGACAAGAACAGAGCATGCTTATATGCTTCGTTCTGCGTATCCATGGCGGTGGCGATACGATGAATCTTTAA | 1308 | 43.27 | MGDLENDEMGFRNSSDGLLNCPSSDRTSVTMAMGSFYGSGWDPLVSLGQSESFGAASMASSHRDFSNSFPIVLENHHHGGGSGTSQTVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLADQILGGCSSSYRNGGTANTAQTSQETLPPPSGEEAALGSPNGKIRKRALDSAFPFSSNTKSEGKVKKDVSGESSSTQEEKNPEMEQNLRSGKQAKEKSSNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDMNIDLERILSKDIFQVRGSNGSVLGFDHPGMSAAPPVVPAHRMFQFQGMMSNMASTSTSTQFPSLPQTMLESDIQTLLQMGFDSGSAIDNLGPNGRVHNLIALHSELPDGQEQSMLICFVLRIHGGGDTMNL | 435 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1229324 | 1232277 | + | Cp4.1LG02g06440.1 | Cpe02g00239 | 464188 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe02g00239 | 435 | MobiDBLite | consensus disorder prediction | 133 | 147 | - | - | |
Cpe02g00239 | 435 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 236 | 286 | IPR011598 | GO:0046983 | |
Cpe02g00239 | 435 | SMART | finulus | 242 | 292 | IPR011598 | GO:0046983 | |
Cpe02g00239 | 435 | MobiDBLite | consensus disorder prediction | 133 | 158 | - | - | |
Cpe02g00239 | 435 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 234 | 302 | IPR036638 | GO:0046983 | |
Cpe02g00239 | 435 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 31 | 400 | IPR024097 | GO:0006355 | |
Cpe02g00239 | 435 | MobiDBLite | consensus disorder prediction | 170 | 227 | - | - | |
Cpe02g00239 | 435 | CDD | bHLH_AtBPE_like | 226 | 311 | - | - | |
Cpe02g00239 | 435 | Pfam | Helix-loop-helix DNA-binding domain | 239 | 287 | IPR011598 | GO:0046983 | |
Cpe02g00239 | 435 | MobiDBLite | consensus disorder prediction | 179 | 210 | - | - | |
Cpe02g00239 | 435 | Gene3D | - | 233 | 306 | IPR036638 | GO:0046983 | |
Cpe02g00239 | 435 | PANTHER | TRANSCRIPTION FACTOR BHLH FAMILY-RELATED | 31 | 400 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe02g00239 | Cpe06g00219 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe02g00239 | Cpe-Chr2:1229324 | Cpe13g00466 | Cpe-Chr13:4893153 | 4.20E-55 | dispersed | |
Cpe18g00556 | Cpe-Chr18:6104913 | Cpe02g00239 | Cpe-Chr2:1229324 | 1.38E-22 | dispersed | |
Cpe18g00762 | Cpe-Chr18:7310238 | Cpe02g00239 | Cpe-Chr2:1229324 | 1.36E-37 | dispersed | |
Cpe02g00239 | Cpe-Chr2:1229324 | Cpe06g00219 | Cpe-Chr6:1165665 | 2.93E-166 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
48988 | PF00010 | HLH | 4.60E-06 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe02g00239 | - | - | cpep:111788194 | 810.061 |