Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe02g00239 ATGGGTGATCTCGAAAATGACGAAATGGGTTTTCGAAATTCGAGTGATGGGTTACTGAATTGTCCATCTTCGGATAGAACTTCAGTAACAATGGCGATGGGTTCGTTTTATGGGTCTGGTTGGGATCCACTGGTTTCATTAGGTCAAAGTGAGAGCTTTGGAGCTGCTTCAATGGCTTCCTCACATCGAGATTTTTCAAATTCCTTTCCTATTGTTTTGGAGAATCATCATCATGGAGGAGGAAGTGGCACATCACAGACTGTTCAATATCCGACAGATTTAGAGATGGGTACGAAGTTGCCATGTTTTGGGAGTGGGAATTATTCCGACATGTTCGGTTCTTTTGGTCTTGCTGATCAGATTCTTGGAGGGTGTTCTTCAAGTTACAGAAATGGAGGAACTGCCAACACTGCTCAAACATCACAAGAAACTTTACCACCACCATCTGGTGAAGAAGCTGCATTAGGTTCACCAAATGGTAAAATCAGAAAACGAGCCCTTGATTCCGCCTTCCCATTTAGCTCAAATACGAAATCTGAAGGGAAAGTGAAAAAAGATGTTTCTGGGGAAAGTTCGAGTACACAAGAAGAGAAAAATCCAGAAATGGAACAGAATTTACGAAGTGGAAAACAAGCTAAAGAGAAGTCCAGTAACAGTGGAGAAGCTCCCAAGGAAAATTATATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAACGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAAGCTGTAATGCTTGATGAAATTATAAACTATGTTCAATCACTGCAACAACAGGTTGAGTTTTTGTCGATGAAACTTGCTACTGTCAACCCCGACATGAACATCGATCTCGAGCGGATTTTATCCAAAGATATTTTCCAGGTACGAGGCAGCAATGGAAGTGTTCTAGGATTTGATCATCCTGGGATGAGCGCAGCTCCTCCGGTCGTCCCCGCTCACCGGATGTTTCAGTTTCAGGGGATGATGTCGAATATGGCATCCACATCCACATCCACGCAGTTTCCTTCTTTACCTCAGACGATGTTGGAAAGTGATATCCAAACTCTTCTTCAAATGGGTTTCGATTCGGGTTCGGCCATTGACAATTTGGGACCAAATGGTAGGGTTCATAATCTAATAGCTTTGCATTCTGAACTTCCAGATGGACAAGAACAGAGCATGCTTATATGCTTCGTTCTGCGTATCCATGGCGGTGGCGATACGATGAATCTTTAA 1308 43.27 MGDLENDEMGFRNSSDGLLNCPSSDRTSVTMAMGSFYGSGWDPLVSLGQSESFGAASMASSHRDFSNSFPIVLENHHHGGGSGTSQTVQYPTDLEMGTKLPCFGSGNYSDMFGSFGLADQILGGCSSSYRNGGTANTAQTSQETLPPPSGEEAALGSPNGKIRKRALDSAFPFSSNTKSEGKVKKDVSGESSSTQEEKNPEMEQNLRSGKQAKEKSSNSGEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLATVNPDMNIDLERILSKDIFQVRGSNGSVLGFDHPGMSAAPPVVPAHRMFQFQGMMSNMASTSTSTQFPSLPQTMLESDIQTLLQMGFDSGSAIDNLGPNGRVHNLIALHSELPDGQEQSMLICFVLRIHGGGDTMNL 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1229324 1232277 + Cp4.1LG02g06440.1 Cpe02g00239 464188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe02g00239 435 MobiDBLite consensus disorder prediction 133 147 - -
Cpe02g00239 435 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 236 286 IPR011598 GO:0046983
Cpe02g00239 435 SMART finulus 242 292 IPR011598 GO:0046983
Cpe02g00239 435 MobiDBLite consensus disorder prediction 133 158 - -
Cpe02g00239 435 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 234 302 IPR036638 GO:0046983
Cpe02g00239 435 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 31 400 IPR024097 GO:0006355
Cpe02g00239 435 MobiDBLite consensus disorder prediction 170 227 - -
Cpe02g00239 435 CDD bHLH_AtBPE_like 226 311 - -
Cpe02g00239 435 Pfam Helix-loop-helix DNA-binding domain 239 287 IPR011598 GO:0046983
Cpe02g00239 435 MobiDBLite consensus disorder prediction 179 210 - -
Cpe02g00239 435 Gene3D - 233 306 IPR036638 GO:0046983
Cpe02g00239 435 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 400 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00239 Cpe06g00219 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00239 Cpe-Chr2:1229324 Cpe13g00466 Cpe-Chr13:4893153 4.20E-55 dispersed
Cpe18g00556 Cpe-Chr18:6104913 Cpe02g00239 Cpe-Chr2:1229324 1.38E-22 dispersed
Cpe18g00762 Cpe-Chr18:7310238 Cpe02g00239 Cpe-Chr2:1229324 1.36E-37 dispersed
Cpe02g00239 Cpe-Chr2:1229324 Cpe06g00219 Cpe-Chr6:1165665 2.93E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
48988 PF00010 HLH 4.60E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe02g00239 - - cpep:111788194 810.061