Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe03g01531 ATGAGAGCAAAGGCCTGGATTAACCAACAAATTTTTGGATTCAAGAGTAAATTCAGGAAGATGATAAATTGTATTCGTTCAGGGGATCAGTTAAGAGTAGATGAAATGATTCATTCATCAGATTCTCTGGCAACTCGAGATTATTCAGCTAGTGGCTTTTCATCCCGAACGGGTGAGGTGGAACCAAAGGTGGATAATGTCAACATTGAAGAAGCTGAATCATCTCTTCGTGAGAGTGGCTATCTGAATTATGAGGAAGCACGAGCTTTACTAGGAAGGCTGGAGTATCAAAAGGAAGGCTTACCTGAAAACTTTGCTATTGATTGTAAATTGCAAGAGACACTAACGAAGGCTGTTGAATTACTTCCAGAATTGTGGAAATCTGCCGGGTCTCCAGAAGAATCAATCTTGTCATATAGGCGTGCCCTCCTCTATCAATGGAATCTGGAAATGGAAACCAGAGCAAAAATAGAAAAAGAGTTTGCAATATTCCTTCTCTATAGTGGTTGTGATGCAAGTCCTCCCAATCTCCGTTCACAGATGGAAAGCTCATTCGTGCCAAGAAGTAATATGGAAGAGGCCATTCTTCTTTTAATGGTTCTGATGAGAAAATATGTACTTGGATTGATTGTATGGGACCCCTCAATAATAGAGCATCTCTCGTTTGCACTGTCTGTTTCAGGGGAATTTGGTGCTCTAGCTAATGAGGTTGAACAATTGCCTCCAGGAATTATAAGCAGAAAAGAAAAATACTGCACCTTAGCTCTTTGTTACTATGGGGAAGGTAAAAGCTTAGTTGCGTTGAATCTTTTGAAGAACTTCTTGAGTAACATAGAGAATGTAGACTGTCTACTGGAATTGTTGCTGGCTTCAAAGCTCTGTGGGGAAAATTTGGTCTGTCTTGATGAGGGGGTGACATACATATTGAGAGTGCTTTCGGAGCTGCGTGGTAAATGCATTCAGATGGCTTCGGTGGCTAATTGTTTACTTGGCGTGCTGTTGTCGGTTATGTCCAAATTCGTCGCTTCCGATTCTCAGAAAGCTCTGAAACAGTCTGAAGCGCTCAAGGCGCTACAAACTGCTGAGCAGCTGATGAGACAAAGAGATCCATTCATTGTTTATCATCTTTGTCTTGAATATGCTGAACAAAGGAAGCTGGATATGGCTCTATACTATGCAAAACAGTTAGTGAACCTCGAGGTTGGCTCTAGTCTGAAGTCTTACTTACTCTTGGCCAGAATATTGTCCGCCCAGCAACGATTTGTCGATGCAGAGACTGTACTCAATGCTGCTCTTGAGCAGACAGGGAAGTGGGAACAGGGGGAACTTTTACGAACTAAAGCTAAGCTCCAGATAGCACAGGGCCAGTTAAAGAATGGCATAGAAACATATACTCAACTTCTTGCTATAATTCAAGTTCAGACCAAAAGTAGTGGGGTTGGAAAGATGCTTTCAAAGGATGTGAGAAAATCTGAGAGAAGTCTGGAAATTGATACATGGCATGACTTGGCCAATATCTACACAAGCTTGTCTCAGTGGCGGGATGCTGAGATATGTCTATCAAAATTGCAGAAAATCAATCCGTATTCTGCTTCCAAATGGCATTCCACAGGTTTACTGTATGAGTCGAAGGGTCTTCCACGAGATGCTTTGCAAGCATACAACAAAGCATTGGACATTGATCCTGGCCATGTTCCCAGCTTGATATCCACTGCCAGTCTTCTCCAACAGCTAGGTGGGAGGCAGTCATTTCCTGTGGTAAGAAGCTTGCTAACCGACGCCCTTCGACTTGATCGAGCAAACCCTTCTGCTTGGTACAGTCTCGGGCTGCTGTATAAAGCTGATGTTGGGGCATCTGCGCTGGAGGTTGCTGAATGCTTTGAGGCTGCATCTCTGCTTGAAGAGTCAGCACCGGTTGAACCTTTCAGATGA 1932 43.22 MRAKAWINQQIFGFKSKFRKMINCIRSGDQLRVDEMIHSSDSLATRDYSASGFSSRTGEVEPKVDNVNIEEAESSLRESGYLNYEEARALLGRLEYQKEGLPENFAIDCKLQETLTKAVELLPELWKSAGSPEESILSYRRALLYQWNLEMETRAKIEKEFAIFLLYSGCDASPPNLRSQMESSFVPRSNMEEAILLLMVLMRKYVLGLIVWDPSIIEHLSFALSVSGEFGALANEVEQLPPGIISRKEKYCTLALCYYGEGKSLVALNLLKNFLSNIENVDCLLELLLASKLCGENLVCLDEGVTYILRVLSELRGKCIQMASVANCLLGVLLSVMSKFVASDSQKALKQSEALKALQTAEQLMRQRDPFIVYHLCLEYAEQRKLDMALYYAKQLVNLEVGSSLKSYLLLARILSAQQRFVDAETVLNAALEQTGKWEQGELLRTKAKLQIAQGQLKNGIETYTQLLAIIQVQTKSSGVGKMLSKDVRKSERSLEIDTWHDLANIYTSLSQWRDAEICLSKLQKINPYSASKWHSTGLLYESKGLPRDALQAYNKALDIDPGHVPSLISTASLLQQLGGRQSFPVVRSLLTDALRLDRANPSAWYSLGLLYKADVGASALEVAECFEAASLLEESAPVEPFR 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 11950278 11954490 + Cp4.1LG03g09880.1 Cpe03g01531 467248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe03g01531 643 ProSiteProfiles Leucine-rich repeat profile. 264 285 IPR001611 GO:0005515
Cpe03g01531 643 SUPERFAMILY TPR-like 442 613 IPR011990 GO:0005515
Cpe03g01531 643 PANTHER OS10G0471400 PROTEIN 13 98 - -
Cpe03g01531 643 PANTHER OS10G0471400 PROTEIN 99 643 - -
Cpe03g01531 643 Gene3D Tetratricopeptide repeat domain 485 638 IPR011990 GO:0005515
Cpe03g01531 643 Gene3D Tetratricopeptide repeat domain 232 484 IPR011990 GO:0005515
Cpe03g01531 643 PANTHER PROTEIN NPG1 13 98 IPR043376 -
Cpe03g01531 643 PANTHER PROTEIN NPG1 99 643 IPR043376 -
Cpe03g01531 643 Pfam Tetratricopeptide repeat 538 563 IPR019734 GO:0005515
Cpe03g01531 643 SUPERFAMILY TPR-like 350 470 IPR011990 GO:0005515
Cpe03g01531 643 SMART tpr_5 497 530 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 441 474 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 531 564 IPR019734 GO:0005515
Cpe03g01531 643 SMART tpr_5 405 438 IPR019734 GO:0005515
Cpe03g01531 643 ProSiteProfiles TPR repeat profile. 531 564 IPR019734 GO:0005515
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe03g01531 Cpe08g00348 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01531 Cpe-Chr3:11950278 Cpe06g00565 Cpe-Chr6:3416728 5.69E-12 dispersed
Cpe15g00093 Cpe-Chr15:703413 Cpe03g01531 Cpe-Chr3:11950278 3.82E-18 wgd
Cpe03g01531 Cpe-Chr3:11950278 Cpe05g00076 Cpe-Chr5:372927 2.06E-16 wgd
Cpe03g01531 Cpe-Chr3:11950278 Cpe08g00348 Cpe-Chr8:2168722 4.28E-51 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe03g01531 K21843 - csv:101206105 976.081