Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00298 ATGGCTCTACACCCACATGAACACACAACCCAACGCCACCACAACACTCTCTTCTTCCTCCACTGCACACACCAACAGCACCAACAACAACAACAACACCTGCAAACAGAGGACCCCATTTTCCACGACAATGGCGGCACCCACTTTCTGGAACAGACGACCCATTTCGTTGCTTGCGAAGATGAAGAGCTTGGTTATCTGTTAGCCAAAGAACGAGATCAGAATCTCGTTTTGGAGCGCTTAATTGAAAGAGACGCAGCTCTGTCTCTGGCTAGAACAGAGGCCATCGAGTGGTTGCTTAAAGTTAATACCTTTTATGGCTTCTCCTCTGTCACCGCTCTCTTAGCCATTAATTACCTCGATCGAATCCTCTCTGGTCCTCATTTTCAAAGAGACAAGCCATGGTTGCTTCAGCTTCTTGCAGTAACTTGCATCTCTTTAGCAGCCAAAGTCGAAGAAATTCGTGTTCCTCTTCTTCTTGATCTCCAGGTGGAAGATTCAAAGTTCATATTTGAGCCAAAAACGATACAAAGAATGGAGCTTTTGGTGCTGAGTGGTCTGAAATGGAAGATGCATCCAGTGACCCCTGTTTCGTTTCTTGGCATTGTAACGAAGCGGCTTGGGTTGAAGAATCAGTGCATTGAGAGGGAGTTTTTCCGGCGCTGTGAGCGTATTCTTCTCTCTCTCGTCTCTGATTCGAGATCAGTGGGGTTTCTTCCTTCTGTGATGGCTGTATCGGCAATGGTGAGCGTTGTTGAAGAGATGGGTGACTGTAACTGTTACTGTAACCCATTGGACTTTCAGGATCGCCTTCTTAATGCCCTCAAAATAACCAAGGAAAGATCGAGGAAATGCTGCAACGTGATAAGGGAGATAACGAAACGGGAAACGAAAGCGAACCGATCAGGAAAGAAGAGGAAGCAGAACGAGGAGGACGAGGGAGAGGAAGAAGAAGACGACGACGAAGAGAGATCAAGAACATCATTAGAAACCGAAACAGAATCAGAATCAGAAGGAGGAGGAAGCCCAAATGGAGTAATGGAAGGCAATTTCAGCTGTGAAAGCTCCGATGATTCGTGGGGCATAGAAGAAGTCACAAGGTGTTGTTGTTCCAAAAGAACTAAAAGCAGTGAAGAATCATGA 1143 46.11 MALHPHEHTTQRHHNTLFFLHCTHQQHQQQQQHLQTEDPIFHDNGGTHFLEQTTHFVACEDEELGYLLAKERDQNLVLERLIERDAALSLARTEAIEWLLKVNTFYGFSSVTALLAINYLDRILSGPHFQRDKPWLLQLLAVTCISLAAKVEEIRVPLLLDLQVEDSKFIFEPKTIQRMELLVLSGLKWKMHPVTPVSFLGIVTKRLGLKNQCIEREFFRRCERILLSLVSDSRSVGFLPSVMAVSAMVSVVEEMGDCNCYCNPLDFQDRLLNALKITKERSRKCCNVIREITKRETKANRSGKKRKQNEEDEGEEEEDDDEERSRTSLETETESESEGGGSPNGVMEGNFSCESSDDSWGIEEVTRCCCSKRTKSSEES 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3757790 3760173 + Cp4.1LG04g07870.1 Cpe04g00298 467860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00298 380 PANTHER CYCLINS 45 353 IPR039361 -
Cpe04g00298 380 SMART cyclin_7 97 185 IPR013763 -
Cpe04g00298 380 CDD CYCLIN 92 184 IPR013763 -
Cpe04g00298 380 ProSitePatterns Cyclins signature. 92 123 IPR006671 -
Cpe04g00298 380 PANTHER CYCLIN-D3-1 45 353 - -
Cpe04g00298 380 MobiDBLite consensus disorder prediction 297 360 - -
Cpe04g00298 380 Gene3D - 193 286 - -
Cpe04g00298 380 Pfam Cyclin, N-terminal domain 77 191 IPR006671 -
Cpe04g00298 380 Pfam Cyclin, C-terminal domain 194 312 IPR004367 -
Cpe04g00298 380 Gene3D - 89 192 - -
Cpe04g00298 380 MobiDBLite consensus disorder prediction 297 311 - -
Cpe04g00298 380 SUPERFAMILY Cyclin-like 54 192 IPR036915 -
Cpe04g00298 380 Coils Coil 304 324 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g00298 Cpe14g00286 CCT
Cpe01g00427 Cpe04g00298 CCT
Cpe01g00427 Cpe04g00298 ECH
Cpe04g00298 Cpe14g00286 ECH
Cpe04g00298 Cpe15g00473 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00298 Cpe-Chr4:3757790 Cpe14g00286 Cpe-Chr14:1670885 6.83E-89 dispersed
Cpe01g00427 Cpe-Chr1:2468894 Cpe04g00298 Cpe-Chr4:3757790 1.10E-84 wgd
Cpe11g00137 Cpe-Chr11:738016 Cpe04g00298 Cpe-Chr4:3757790 5.17E-74 wgd
Cpe15g00473 Cpe-Chr15:5737985 Cpe04g00298 Cpe-Chr4:3757790 4.74E-147 wgd
Cpe19g00642 Cpe-Chr19:5181481 Cpe04g00298 Cpe-Chr4:3757790 2.86E-67 wgd
Cpe02g00199 Cpe-Chr2:1031220 Cpe04g00298 Cpe-Chr4:3757790 3.76E-47 wgd
Cpe04g00298 Cpe-Chr4:3757790 Cpe06g00180 Cpe-Chr6:976067 2.06E-69 wgd
Cpe04g00298 Cpe-Chr4:3757790 Cpe07g00498 Cpe-Chr7:3257734 3.51E-69 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00298 K14505 - csv:101222066 421.009