Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g00326 ATGATTTCAACTCCATCACAAAAACTCACTATAAATACATCCCACAAGGCCAACATAAAATTAAAAATGGAGCAACTAAGAGGCCCCATTGTTGAAGATGGAGATCAATGGAGCTCTCTCAATGGAGTTTTCACAGCTGATGAAGAAGCTGCAACATTCATGGCTCAACTTTTCAACTCCACAGCTCCTGACCCTTTCATGGCTGCCCTTGATCTTCATAATAATTATTGCAACCCCATGAACTTTTGCTTGGGAGAGCTTGGAAATGATCACAATGGTGGTTTCAATCTTGAAGAGGAGGACTACAATTTGCAGGCTTGTTATGAAGCTGAGTTCATGAAATTACCTGAAGAAGAAGCTGCCATGGAACAAAAGAGGCATACCCAACTTGAGATCAATTGCAAGAAACGATCGAGGGGATCTCGCGATGTAGAGAAGTGGAATGAAAGGTCAAAGAAAACTCAGAAGCTTACCTCAAGCAACAACACTGAAGAAGATGGAAATGCTGTTCATAGCAAGCAAAGCACAAGCAGCTATTGCTCGGAAGACGAATCCAACGCCTCGTTCGAGCTGAATAACTCGAGATCAAATCCGAAAGAGACGGCCAAAACCAGGGCTAGTAGAGGCTCAGCTACAGATCCACAGAGCCTCTATGCAAGGAGAAGAAGAGAAAGAATCAATGAGAGGTTGAAAATCTTACAAAATCTTGTCCCAAATGGAACAAAGGTTGATATCAGCACAATGCTTGAGGAAGCTGTTCAATATGTGAAGTTTCTACAACTTCAAATCAAGCTATTAAGCTCCGATGATTTATGGATGTACGCTCCGATCGCCTACAACGGAATGGATATCGGGCTTAATCGAACCCCGAACACGTCGAAAGAATTATGA 891 42.42 MISTPSQKLTINTSHKANIKLKMEQLRGPIVEDGDQWSSLNGVFTADEEAATFMAQLFNSTAPDPFMAALDLHNNYCNPMNFCLGELGNDHNGGFNLEEEDYNLQACYEAEFMKLPEEEAAMEQKRHTQLEINCKKRSRGSRDVEKWNERSKKTQKLTSSNNTEEDGNAVHSKQSTSSYCSEDESNASFELNNSRSNPKETAKTRASRGSATDPQSLYARRRRERINERLKILQNLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNRTPNTSKEL 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 4005182 4008111 + Cp4.1LG04g07620.1 Cpe04g00326 467888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g00326 296 MobiDBLite consensus disorder prediction 120 222 - -
Cpe04g00326 296 MobiDBLite consensus disorder prediction 154 214 - -
Cpe04g00326 296 Pfam Helix-loop-helix DNA-binding domain 220 260 IPR011598 GO:0046983
Cpe04g00326 296 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 114 291 - -
Cpe04g00326 296 MobiDBLite consensus disorder prediction 120 153 - -
Cpe04g00326 296 Gene3D - 208 267 IPR036638 GO:0046983
Cpe04g00326 296 CDD bHLH_AtIND_like 211 273 - -
Cpe04g00326 296 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 276 IPR036638 GO:0046983
Cpe04g00326 296 SMART finulus 216 265 IPR011598 GO:0046983
Cpe04g00326 296 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 210 259 IPR011598 GO:0046983
Cpe04g00326 296 PANTHER TRANSCRIPTION FACTOR BHLH139-LIKE 114 291 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe01g00404 Cpe04g00326 CCT
Cpe04g00326 Cpe14g00269 CCT
Cpe04g00326 Cpe14g00269 ECH
Cpe01g00404 Cpe04g00326 ECH
Cpe04g00326 Cpe15g00442 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00326 Cpe-Chr4:4005182 Cpe15g00442 Cpe-Chr15:5543153 1.80E-96 dispersed
Cpe01g00404 Cpe-Chr1:2341237 Cpe04g00326 Cpe-Chr4:4005182 1.03E-48 wgd
Cpe11g00124 Cpe-Chr11:681069 Cpe04g00326 Cpe-Chr4:4005182 2.22E-46 wgd
Cpe15g00441 Cpe-Chr15:5540508 Cpe04g00326 Cpe-Chr4:4005182 1.63E-24 wgd
Cpe04g00326 Cpe-Chr4:4005182 Cpe06g00195 Cpe-Chr6:1046524 2.40E-52 wgd
Cpe04g00326 Cpe-Chr4:4005182 Cpe07g00514 Cpe-Chr7:3391186 8.85E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49330 PF00010 HLH 2.30E-09 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g00326 - - mcha:111017406 301.982