Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cpe04g01421 | ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCCGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAATCTATCTCCTACCAACCAACCTTCTGAAGAATCTACCTTCCTTACCCCTGGTTTCTCAGCTACAGCCAGTAATGGCTCTGGAATCCTCATCCAGAAGGCACTTCCATTGGACAAGGAAGGTTAGTAATGAAGATGAAGACGATTCCACCTTCAAATCCTCAGAATCTGCCCCAGAAGAAAAGGAGGAGGAGAACGCCAAGCCCATTTCACAGGACTCACAACATCAGCAGCAGGTTGGAGCACAATTGTCAAGGAGGAAACTGCAACAGCTTGCCGTCTCTCGGTTCCGTTCGGTTCTCACTGCCCTTGGCCGCAGCCGGAACCAGCAGCTCGGTCTTCGTTCTCGAGTGGTCGGAACACTGTTTGGTTCTCGCCGAGGGCATGTTCATTTTGCATTCCAGAGAGACCCCAATTCTCATCCCGCTTTCTTGATTGAGCTTGCTACACCAATCAGTGGTCTGGTGAAGGAAATGGCATCTGGACTGGTTCGAATTGCACTGGAATGCGATAAAGAGAAAGAGGAGAACAAGAAACCAGGAAGGAGGCTGCTTGAAGAGCCTATTTGGAGGACATTTTGCAATGGGAAGAAATGCGGTTTTGCTTCAAGGCGAGAATGTGGACCTAAGGAGTGGAAGATCTTGAAGGCTGTGGAGCCAATTTCCATGGGTGCTGGCGTTTTACCGGTGAACGAAGGCACCGAGGGCGGTGGCGGGGAGGGAAAAGAGGGATCAGATGGTGAAATCATGTACATGAGAGCCAAGTTTGAGAGAATTGTAGGCTCTAGGGACTCTGAAGCTTTCTACATGATGAACCCAGATAGTAATGGTGCTCCTGAGCTCAGTGTCTATTTACTAAGGTTCCCATTTAAGAAGGAGGATCTTGGTTTTCGTCTCTCATTTTGGTGGACTGATGTTGGAGGAGTTAGAAGAGATGTGGCTGAAGACGGGGTCGATGAAGCGACCGCAGCCAAGGATTGCGCCTGT | 1440 | 48.26 | MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQIYLLPTNLLKNLPSLPLVSQLQPVMALESSSRRHFHWTRKVSNEDEDDSTFKSSESAPEEKEEENAKPISQDSQHQQQVGAQLSRRKLQQLAVSRFRSVLTALGRSRNQQLGLRSRVVGTLFGSRRGHVHFAFQRDPNSHPAFLIELATPISGLVKEMASGLVRIALECDKEKEENKKPGRRLLEEPIWRTFCNGKKCGFASRRECGPKEWKILKAVEPISMGAGVLPVNEGTEGGGGEGKEGSDGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSVYLLRFPFKKEDLGFRLSFWWTDVGGVRRDVAEDGVDEATAAKDCAC | 480 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 11414688 | 11423253 | + | Cp4.1LG04g14210.1 | Cpe04g01421 | 468983 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cpe04g01421 | 480 | MobiDBLite | consensus disorder prediction | 190 | 235 | - | - | |
| Cpe04g01421 | 480 | TIGRFAM | A_thal_3588: uncharacterized plant-specific domain TIGR01570 | 269 | 438 | IPR006460 | GO:0010274 | |
| Cpe04g01421 | 480 | Pfam | Protein of unknown function, DUF617 | 269 | 438 | IPR006460 | GO:0010274 | |
| Cpe04g01421 | 480 | PANTHER | PROTEIN MIZU-KUSSEI 1 | 180 | 438 | IPR006460 | GO:0010274 | |
| Cpe04g01421 | 480 | MobiDBLite | consensus disorder prediction | 190 | 221 | - | - | |
| Cpe04g01421 | 480 | PANTHER | BNAC07G49860D PROTEIN | 180 | 438 | - | - | |
| Cpe04g01421 | 480 | SUPERFAMILY | Histone-fold | 12 | 141 | IPR009072 | GO:0046982 | |
| Cpe04g01421 | 480 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 14 | 79 | IPR003958 | - | |
| Cpe04g01421 | 480 | Gene3D | Histone, subunit A | 4 | 145 | IPR009072 | GO:0046982 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cpe01g01385 | Cpe04g01421 | CCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cpe04g01421 | Cpe-Chr4:11414688 | Cpe20g00100 | Cpe-Chr20:535949 | 8.00E-106 | dispersed | |
| Cpe01g01374 | Cpe-Chr1:8260668 | Cpe04g01421 | Cpe-Chr4:11414688 | 2.91E-73 | wgd | |
| Cpe18g00736 | Cpe-Chr18:7170002 | Cpe04g01421 | Cpe-Chr4:11414688 | 1.28E-149 | wgd | |
| Cpe04g01421 | Cpe-Chr4:11414688 | Cpe09g01149 | Cpe-Chr9:9809668 | 1.83E-115 | wgd | |
| Cpe04g01421 | Cpe-Chr4:11414688 | Cpe09g00264 | Cpe-Chr9:1540226 | 3.76E-83 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 49431 | PF04759 | DUF617 | 2.30E-68 | No_clan | Cpe | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cpe04g01421 | - | - | cpep:111793237 | 533.487 |