Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe04g01421 ATGGAGCCGATGGACATAGTTGGAAAGTCTAAAGAGGACGCCTCGCTTCCTAAGGCGACTATGACTAAAATTATCAAAGAGATGTTGCCCCCTGATGTTCGTGTTGCAAGAGATGCCCAAGATCTTCTGATTGAGTGTTGTGTAGAGTTTATAAACCTTGTGTCGTCCGAGTCCAATGAAGTTTGTAGCAAAGAAGATAAAAGAACAATTGCACCTGAGCACGTGCTCAAGGCTCTTGAGGTGCTTGGTTTTAGTGAGTACATTGAGGAAGTTTATGCTGCATATGAACAACACAGGCTCGAAACTATGCAAGACTCGTTGAAAGGTGGAAAGTGGAGTAATGGAGCCGAGATGACTGAAGAAGAAGCTTTGGCTGAGCAGCAAAGAATGTTTGCAGAGGCACGTGCAAGAATGAATGGCAGTAACACCGCTCCGAAGCAACTGGAGCCTGAGCAAATCTATCTCCTACCAACCAACCTTCTGAAGAATCTACCTTCCTTACCCCTGGTTTCTCAGCTACAGCCAGTAATGGCTCTGGAATCCTCATCCAGAAGGCACTTCCATTGGACAAGGAAGGTTAGTAATGAAGATGAAGACGATTCCACCTTCAAATCCTCAGAATCTGCCCCAGAAGAAAAGGAGGAGGAGAACGCCAAGCCCATTTCACAGGACTCACAACATCAGCAGCAGGTTGGAGCACAATTGTCAAGGAGGAAACTGCAACAGCTTGCCGTCTCTCGGTTCCGTTCGGTTCTCACTGCCCTTGGCCGCAGCCGGAACCAGCAGCTCGGTCTTCGTTCTCGAGTGGTCGGAACACTGTTTGGTTCTCGCCGAGGGCATGTTCATTTTGCATTCCAGAGAGACCCCAATTCTCATCCCGCTTTCTTGATTGAGCTTGCTACACCAATCAGTGGTCTGGTGAAGGAAATGGCATCTGGACTGGTTCGAATTGCACTGGAATGCGATAAAGAGAAAGAGGAGAACAAGAAACCAGGAAGGAGGCTGCTTGAAGAGCCTATTTGGAGGACATTTTGCAATGGGAAGAAATGCGGTTTTGCTTCAAGGCGAGAATGTGGACCTAAGGAGTGGAAGATCTTGAAGGCTGTGGAGCCAATTTCCATGGGTGCTGGCGTTTTACCGGTGAACGAAGGCACCGAGGGCGGTGGCGGGGAGGGAAAAGAGGGATCAGATGGTGAAATCATGTACATGAGAGCCAAGTTTGAGAGAATTGTAGGCTCTAGGGACTCTGAAGCTTTCTACATGATGAACCCAGATAGTAATGGTGCTCCTGAGCTCAGTGTCTATTTACTAAGGTTCCCATTTAAGAAGGAGGATCTTGGTTTTCGTCTCTCATTTTGGTGGACTGATGTTGGAGGAGTTAGAAGAGATGTGGCTGAAGACGGGGTCGATGAAGCGACCGCAGCCAAGGATTGCGCCTGT 1440 48.26 MEPMDIVGKSKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSKEDKRTIAPEHVLKALEVLGFSEYIEEVYAAYEQHRLETMQDSLKGGKWSNGAEMTEEEALAEQQRMFAEARARMNGSNTAPKQLEPEQIYLLPTNLLKNLPSLPLVSQLQPVMALESSSRRHFHWTRKVSNEDEDDSTFKSSESAPEEKEEENAKPISQDSQHQQQVGAQLSRRKLQQLAVSRFRSVLTALGRSRNQQLGLRSRVVGTLFGSRRGHVHFAFQRDPNSHPAFLIELATPISGLVKEMASGLVRIALECDKEKEENKKPGRRLLEEPIWRTFCNGKKCGFASRRECGPKEWKILKAVEPISMGAGVLPVNEGTEGGGGEGKEGSDGEIMYMRAKFERIVGSRDSEAFYMMNPDSNGAPELSVYLLRFPFKKEDLGFRLSFWWTDVGGVRRDVAEDGVDEATAAKDCAC 480
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 11414688 11423253 + Cp4.1LG04g14210.1 Cpe04g01421 468983
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe04g01421 480 MobiDBLite consensus disorder prediction 190 235 - -
Cpe04g01421 480 TIGRFAM A_thal_3588: uncharacterized plant-specific domain TIGR01570 269 438 IPR006460 GO:0010274
Cpe04g01421 480 Pfam Protein of unknown function, DUF617 269 438 IPR006460 GO:0010274
Cpe04g01421 480 PANTHER PROTEIN MIZU-KUSSEI 1 180 438 IPR006460 GO:0010274
Cpe04g01421 480 MobiDBLite consensus disorder prediction 190 221 - -
Cpe04g01421 480 PANTHER BNAC07G49860D PROTEIN 180 438 - -
Cpe04g01421 480 SUPERFAMILY Histone-fold 12 141 IPR009072 GO:0046982
Cpe04g01421 480 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Cpe04g01421 480 Gene3D Histone, subunit A 4 145 IPR009072 GO:0046982
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe01g01385 Cpe04g01421 CCT
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g01421 Cpe-Chr4:11414688 Cpe20g00100 Cpe-Chr20:535949 8.00E-106 dispersed
Cpe01g01374 Cpe-Chr1:8260668 Cpe04g01421 Cpe-Chr4:11414688 2.91E-73 wgd
Cpe18g00736 Cpe-Chr18:7170002 Cpe04g01421 Cpe-Chr4:11414688 1.28E-149 wgd
Cpe04g01421 Cpe-Chr4:11414688 Cpe09g01149 Cpe-Chr9:9809668 1.83E-115 wgd
Cpe04g01421 Cpe-Chr4:11414688 Cpe09g00264 Cpe-Chr9:1540226 3.76E-83 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49431 PF04759 DUF617 2.30E-68 No_clan Cpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe04g01421 - - cpep:111793237 533.487