Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe05g01281 ATGGCTACTTACTATTCTAGTTCGAGTAATGGAAGGGATGCTACTCCTATCCTCTACTCGAGAGGAGCTTTGATCGGTTCGTATGAAGACTCGTCGATTCTTCCCCGGAATATGATGATGCATAATTCTGGGATGTACATGGATTCATGTCCTTCACAGGGAGACAATGGTTGTGGTCAGATAACGTCGGTTGGAGCAGCGGGAACGAGCCAACAACAGCAGGAGTTTTTGTCGAATCTCGGTGGTTCGGAGATTGCTGAGCATGATTTCAATACATGGAGAGGAGAGGGAAGGAGTGAAATGGTCGGTGCGAGCTCGATGCGTGGCCCGACCAATGTTCTTCATGGTGGGCAGAATTTGCAGGGTCAGGGGTTATCCCTTACTCTTAGTACACAAATTCCATCTGGAATTCAAATGCCATCAATTCCTTATAGGAATTCGGATATGGGTTTAGCTTCGTTCTTGAGTCCGAATCCGACTAGTTCAGGCGACGATGGCTGCAGAAATGGCAGCTCTAGAGACGAGCAGTTGGCAAAGGGCGAATTATCTCAATACAGTATGTCTACGATTGCACGAACGATGCCGAACTCGAAGTACCTTAAGGCAGCACAACAACTCCTTGATGAAGCTGTTAATGTCAGGAAAGCTTTGAAGCGACCTAATAATGAGAGAAACCAGAGCTCACATGAGCATGAAACTAGAAGTGGAAAGAATGGTGATGCAGGAACCAAAAACGATGGTTCGATGCTCACTGCAAGCGGAGCGTCTTCAAACCCTCAAGAAACTGGAAGCAATTCAACTTGTGAGCTCTCTCATGCTGAAAAGCAAGATTTGCAGAACAAGTTGACAAAGCTTTTATACATGTTGGATGAGGTTGATAGAAGGTACAATCAGTATTACCATCAGATGCAGATTGTGGTATCATCGTTTGATGTTATAGCAGGATGTGGGGCGTCTAAGCCATATACTGCACTTGCACTCCAGACTATATCTCGTCATTTTCGGTGCTTGCGGGATGCAATAGCTGGTCAAGTTCGAGCTACCCGTAAAAGCCTGGGAGAGCATGAGAACTCTGGAAATGACAAAGGAGTTGGAATCACCCGTCTCCGGTACGTCGACCAGCAGTTAAGGCAACAAAGGGCTCTTCAGCAGCTTGGTATGATACAGCAGCATGCATGGAGGCCTCAAAGAGGGTTGCCTGAGAACTCTGTTTCGATTCTTCGTGCTTGGCTGTTCGAGCATTTCCTTCATCCGTATCCAAAGGACTCTGATAAGATCATGTTGGCAAGGCAAACAGGATTGACTAGAAGTCAGGTACATGTCGTGGAGGCTGCCGATTTAGCTCCAAATCGTCTTCACATTTTATTTCTCCACCATGTCTATATCTACCTCGAGTTTTGTTGTACTGACATGTGTACCGATATTAAATTTGATGTCGTCGATGGGCTTGTGCAGGTCTCTAATTGGTTTATCAATGCACGCGTTCGTCTTTGGAAACCTATGGTAGAGGAAATGTACAAGGAAGAGGCAGGCAGTGCAGAAATGGACTCTATATCATCATCTGAAAATGTTGGCAAGGGAACAAAAGGAGATAACAGGACCTTTGAGGATAATAAGGAGGAGGATCTGCAACAAAGTACAAGTTCAACAGCCACCGAAAGATGTAGCGCTGGAGACATTATCGACTTAAAATCCGATCAAGCCTCTAATCTTGGAAATTCAGGTTCCACCAGACTAGCTAGTTTCCAAAATGGTGCTCACATCGAAGCTCAAAACGAGCTGGTAAAGTCGAGGGAGGAGCTAAGGCCTAATGTAAATAACTCTAATTTCTTTCCTGATGCAATTGTCCAGTCTCAGGCAGGAAGTGACAGGTTTATGGCTGCCGCTGCTGCCTATCACATGTCTGAACTGGGAAGGTTTGGGGCGGTTAGCGGGGTATCGCTTACACTGGGCTTGCAGCATTGTGAGGGTGGTGGCATACCTATGCCCACTGGGACACATCATGGTTTTGCAGCCATGAGAGGAGACGAAATGTACAATGCTGCAGCGTCTTCTCTCGGGGACACAGGCCATTTTGAATGCGTAAACGCTGGTAATCCGCAACCGAGGTTCGGCCCTTCTCATCTTTACCATGATTTTGTTGTGTAA 2148 46.32 MATYYSSSSNGRDATPILYSRGALIGSYEDSSILPRNMMMHNSGMYMDSCPSQGDNGCGQITSVGAAGTSQQQQEFLSNLGGSEIAEHDFNTWRGEGRSEMVGASSMRGPTNVLHGGQNLQGQGLSLTLSTQIPSGIQMPSIPYRNSDMGLASFLSPNPTSSGDDGCRNGSSRDEQLAKGELSQYSMSTIARTMPNSKYLKAAQQLLDEAVNVRKALKRPNNERNQSSHEHETRSGKNGDAGTKNDGSMLTASGASSNPQETGSNSTCELSHAEKQDLQNKLTKLLYMLDEVDRRYNQYYHQMQIVVSSFDVIAGCGASKPYTALALQTISRHFRCLRDAIAGQVRATRKSLGEHENSGNDKGVGITRLRYVDQQLRQQRALQQLGMIQQHAWRPQRGLPENSVSILRAWLFEHFLHPYPKDSDKIMLARQTGLTRSQVHVVEAADLAPNRLHILFLHHVYIYLEFCCTDMCTDIKFDVVDGLVQVSNWFINARVRLWKPMVEEMYKEEAGSAEMDSISSSENVGKGTKGDNRTFEDNKEEDLQQSTSSTATERCSAGDIIDLKSDQASNLGNSGSTRLASFQNGAHIEAQNELVKSREELRPNVNNSNFFPDAIVQSQAGSDRFMAAAAAYHMSELGRFGAVSGVSLTLGLQHCEGGGIPMPTGTHHGFAAMRGDEMYNAAASSLGDTGHFECVNAGNPQPRFGPSHLYHDFVV 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 8935118 8938923 - Cp4.1LG05g12790.1 Cpe05g01281 470486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe05g01281 715 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 485 666 - -
Cpe05g01281 715 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 10 73 439 - -
Cpe05g01281 715 SMART prehox3 188 343 IPR006563 -
Cpe05g01281 715 Pfam Associated with HOX 195 342 IPR006563 -
Cpe05g01281 715 Coils Coil 275 295 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 240 272 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 514 528 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 218 239 - -
Cpe05g01281 715 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 73 439 - -
Cpe05g01281 715 CDD homeodomain 393 441 IPR001356 GO:0003677
Cpe05g01281 715 MobiDBLite consensus disorder prediction 151 167 - -
Cpe05g01281 715 Pfam Homeobox KN domain 410 496 IPR008422 GO:0003677|GO:0006355
Cpe05g01281 715 SMART HOX_1 393 504 IPR001356 GO:0003677
Cpe05g01281 715 MobiDBLite consensus disorder prediction 529 543 - -
Cpe05g01281 715 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 485 666 - -
Cpe05g01281 715 SUPERFAMILY Homeodomain-like 389 441 IPR009057 -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 510 552 - -
Cpe05g01281 715 Gene3D - 388 514 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 218 272 - -
Cpe05g01281 715 MobiDBLite consensus disorder prediction 139 181 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g01281 Cpe16g00265 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g01281 Cpe-Chr5:8935118 Cpe12g00736 Cpe-Chr12:6825921 5.10E-101 dispersed
Cpe16g00265 Cpe-Chr16:4649470 Cpe05g01281 Cpe-Chr5:8935118 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe05g01281 - - csv:101205137 1165.21