Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00219 ATGGGTGATCTCGAAAACGACGAAATGGGTTTTCGAAATTCAAACGAGGGGTTACTCAATTGTTCATCTTCCGACAAAATTCCAGGAACAATGGCGATGGGGTCTTTCTTTGGGTCTGGTTGGGATCCAATGGTTTCTTCCCATGGCGAATTTTCAAATTCTTTTCCTGTTGTTTTGGAGAGCCATGGAGGGAGTGGGACGACACAGGGTGTTCATTATCCCACAGATTTGGGGTTTGCCAATGGGAATTATTCCGACATGTTTGGTTCTTTTGGTGTTGCCGGGCAGATTCTTGGTGGGTGTTCTTCCAATTACAGAAATGGAGGAACCACAGAGAAGTTATTACCACCATCAGGCGAAGAAACTGCTGCAGGATCACCAAATGGTAAACTCAGAAAACGAGCCCTTGATTCCACTTTCCCATTTAGCCAGCCAAACAAGAAATCTGAAGTGAAATTGAAGAAGGATGTTTCTGGAGACAGTTCCAGTACACAGGAAGAGAAGAACGCAGAAATGGAGCAGAAATTAGGTGGTAAGGCAACTGGAAAACAAGCTAAAGAGAAGACCAATGATAGCACAGAAGCTCCCAAGGAGAATTACATTCATGTGCGAGCTAGAAGAGGGCAAGCCACAAACAGCCATAGCCTTGCTGAGAGGGTGAGGAGGGAGAAGATTAGTGAGCGGATGAGATTGCTTCAAGAACTTGTTCCTGGATGCAATAAGATTACTGGAAAGGCTGTTATGCTTGATGAGATTATCAACTATGTTCAGTCACTGCAACAGCAGGTTGAGATTTTCCACGCACGAGGCAGCAACGGAACTGTTCTTGGATATGATCCCGGGTTGAGCGCGGTTTCCCCGGTCCCTCCTCACCGAATATTTCAGCTTCAGGGGACGATGTCAAATATGCCAACCAACACCACATTCACACAGTTTCCTCCTTTGCCTCAGGGCGGTTTAAAGCAGAGCGCTAACTTCATGCAAAGGGCGGTTGAAATGTTTTGA 1005 45.97 MGDLENDEMGFRNSNEGLLNCSSSDKIPGTMAMGSFFGSGWDPMVSSHGEFSNSFPVVLESHGGSGTTQGVHYPTDLGFANGNYSDMFGSFGVAGQILGGCSSNYRNGGTTEKLLPPSGEETAAGSPNGKLRKRALDSTFPFSQPNKKSEVKLKKDVSGDSSSTQEEKNAEMEQKLGGKATGKQAKEKTNDSTEAPKENYIHVRARRGQATNSHSLAERVRREKISERMRLLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEIFHARGSNGTVLGYDPGLSAVSPVPPHRIFQLQGTMSNMPTNTTFTQFPPLPQGGLKQSANFMQRAVEMF 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 1165665 1168952 + Cp4.1LG06g02080.1 Cpe06g00219 470999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00219 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 209 259 IPR011598 GO:0046983
Cpe06g00219 334 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 264 323 - -
Cpe06g00219 334 MobiDBLite consensus disorder prediction 109 198 - -
Cpe06g00219 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 264 323 IPR024097 GO:0006355
Cpe06g00219 334 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 32 265 IPR024097 GO:0006355
Cpe06g00219 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 207 267 IPR036638 GO:0046983
Cpe06g00219 334 Pfam Helix-loop-helix DNA-binding domain 212 260 IPR011598 GO:0046983
Cpe06g00219 334 Gene3D - 206 272 IPR036638 GO:0046983
Cpe06g00219 334 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 32 265 - -
Cpe06g00219 334 SMART finulus 215 265 IPR011598 GO:0046983
Cpe06g00219 334 MobiDBLite consensus disorder prediction 148 198 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00239 Cpe06g00219 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe06g00219 Cpe-Chr6:1165665 Cpe09g00247 Cpe-Chr9:1420189 2.59E-43 dispersed
Cpe02g00239 Cpe-Chr2:1229324 Cpe06g00219 Cpe-Chr6:1165665 2.93E-166 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49643 PF00010 HLH 3.20E-06 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00219 - - cpep:111797605 630.172