Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe06g00777 ATGGTCTGGACGAGAGGCCCTGCCGTCGGCCGCGGCTCATCTGCCACCGTCTATTTGGCCACAGACGCCTCCTCCGGCCACCACTTCGCCGTCAAGTCCACCGACCTCTCTTCATCAGCGTTGTTGCAGAAGGAACACGCTCTTCTCTCCAGATTGAGCTCTCCATACCTTATCAACTGCCTAGGTTTCGACATTGAAACTGAAACCTTCAAGCTTCCGGTGTTCAATCTGTTCATGGAGTATTTGCCGGAGGGGACGCTGTGGGATGCGATTCAGAGAAACGGCGGCCGGATGGAGGAATCGACGATCCGAGTGTTTTCGCGCCAGATTTTGAAAGGATTGGAGTACCTTCACGGTAATGGATTGGCGCATTGCGATATCAAGAGCCGGAATCTGTTAATGAGTGATGCAGGTTTAAAAATCGCCGATCTAGGTTGTGCGAAATTTGTGGATGGAGTTTCTGGAAATGGAGTTAGGGATTTTTCTGGTTCGCCGGCGTTTATGGCGCCGGAGGTTGCGAGAGGTGAAGAACAGGGGTTTCCGGCGGATATTTGGGCTTTTGGATGTACAGTCATTGAAATGGCTACTGGCAAACATCCGTGGGCGGATATAAAGGATCCGGTGTCGGCGTTGTATCGGATTGGATTTACCGGCGAGTTGCCAGAGGCTCCACGGTGGTTATCGGAGAGGGCGAGGGATTTTGTCGCTAAGTGTTTGATAAAAGTCCCGAAAGAAAGATGGACTGCGAAACAGCTTCTTGAGCATCCGTTTCTTCAGGGATTTGATTCCGAGTCGGAAATTGAATCTTCGTGGATGAAAACTATGAACTCTTCTCCGAGGTGTGTTTTGGATCAAAGCTTTTGGGATTCAATAGAGGATTCGAAGACACCATTGAAGGTAACGCATCAAGCTTCGTTGGAGGATTGTCCGGCTGAGAGGATTAGAAGTTTGGCTGGTAATTTGTCGTGCGATTGGGATTTGGAAGGGGACGATGGAGATTGGATTTTGATCAGAAACAATGGCGTCGGCGGTGGAAGCCATGGAAATGGATCTGTGAGCTCGGATTTTTCAGCTACAGTTGAAGAAGAAGAAGAGCTGGAAATTTTGAACTTGGAATTTGAAGAAAATTCTTCGAACGCCGCTACACCGGAGCTTTCTTCTTCGAGCAATTGCCGATTCGAAGCTAGAAATCTCCGTCCAGGCTTCACCGTTGGAGTTCCGGAGATTGTAATGGAAGCGCCGACGTTCTCCATCGCTGTTTCTTCTTCTTCCTCTTCTTCTCGGACTGTATTTCGGTCACTTTCATCGTCGGCTCATACGAGTTCTCTCTTTTTTCTTCGCAATAATCATTACAAAACTCGTCATCTTAAAGTTAAGTCCTCCGGTAAGTTCGCAGTTCGTGCCTCATTGAGTGGTGATTCAGTTGTAACTTTGCTGGATTATGGTGCTGGTAATGTTCGTAGTGTGAGGAATGCAATTCGTTACCTTGGCTTCGACATCAAAGATGTGCAAACTCCAGAAGACATTCTAAATGCAAAACGCCTAATATTTCCTGGAGTTGGGGCATTTGCTCCTGCCATGGATGTGCTAAACAGTAAAGGCATGGCTGAAGCAATCTGCAGTTATATTGAGAATGATCGCCCTTTTTTAGGTATTTGTCTTGGGCTTCAACTACTCTTCGAATCAAGCGAGGAGAACGGACCAGTAAAAGGTCTTGGCTTAATACCAGGCGTGGTTGGGCGTTTTGACTCTTCTAATGGTTTTAGGGTACCCCATATTGGATGGAATGCTTTGGAAATCTCAGAGGACTCTGAGATATTGGATGAAATTTCTAATCGTCATGTCTACTTTGTTCATTCTTACCGTGCTATGCCATCAGACAAGAACAAGGAGTGGATCTCTTCTACTTGCAGCTATGGCGACAGGTTTATAGCTTCAGTTAGAAGGGGAAATGTCCATGCAGTTCAATTCCACCCAGAAAAGAGTGGAGAGGTAGGTCTGTCTGTCCTTAGAAGATTCTTGTTTCCAAAGTCAACCGTGACCAAGAAGCCTAATGAGGGAAAGGCATCTCGACTTGCAAAAAGGGTTATTGCTTGTCTTGATGTGCGGACAAATGACCAAGGGGATCTTGTTGTTACCAAAGGGGACCAATATGATGTCAGGGAGCAAACAGAAGAAAATGAGGTGAGGAACCTTGGCAAGCCGGTAGAGCTTGCTGGACAGTACTACAAGGATGGTGCTGATGAGGTCAGTTTTTTGAATATAACTGGTTTTCGCGACTTCCCTCTAGGCGACTTGCCAATGTTGCAGGTGCTGAGATACACATCAGAAAATGTTTTTGTACCATTGACTGTTGGGGGCGGGATTAGAGATTTTAAGGATGCGAATGGCAGGCACTATTCTAGCCTGGAAGTTGCTTCAGAATATTTCAGATCTGGAGCTGATAAAATATCTATTGGAAGTGATGCTGTTTATGCTGCCGAAGAATATTTAAGAACTGGCGTAAAAACAGGAAAGACCAGCTTGGAGCAGATTTCTAAGGTTTATGGAAATCAGGCTGTTGTGGTAAGTATTGATCCTCGTAGAGTGTACCTTAAAAGTCCCGATGATGTAGAGTTCAAGGTTATACGAGTAACAAACCCAGGTCCTAATGGAGAAGAATATGCATGGTATCAGTGTACAGTTAGTGGAGGTCGAGAAGGTCGACCTATTGGAGCTTATGAGCTTGCAAAAGCCGTTGAGGAGCTTGGTGCTGGAGAAATACTGCTGAACTGCATAGATTGTGATGGTCAAGGAAAAGGATTTGATACAGATCTGGTAAAGCTGATATCAGATTCTGTGAGCATCCCCGTCATTGCCAGTAGTGGTGCTGGGTGTCCTGACCATTTCTCTGAGGTGTTCAACAAAACGAATGCATCAGCAGCCCTTGCTGCTGGCATTTTTCATCGCAAGGAGGTGCCTATTCAGTCCGTAAAAGAGCATTTGTTTAAGGAAGGCATAGAAGTGAGAATGTAA 3015 46.07 MVWTRGPAVGRGSSATVYLATDASSGHHFAVKSTDLSSSALLQKEHALLSRLSSPYLINCLGFDIETETFKLPVFNLFMEYLPEGTLWDAIQRNGGRMEESTIRVFSRQILKGLEYLHGNGLAHCDIKSRNLLMSDAGLKIADLGCAKFVDGVSGNGVRDFSGSPAFMAPEVARGEEQGFPADIWAFGCTVIEMATGKHPWADIKDPVSALYRIGFTGELPEAPRWLSERARDFVAKCLIKVPKERWTAKQLLEHPFLQGFDSESEIESSWMKTMNSSPRCVLDQSFWDSIEDSKTPLKVTHQASLEDCPAERIRSLAGNLSCDWDLEGDDGDWILIRNNGVGGGSHGNGSVSSDFSATVEEEEELEILNLEFEENSSNAATPELSSSSNCRFEARNLRPGFTVGVPEIVMEAPTFSIAVSSSSSSSRTVFRSLSSSAHTSSLFFLRNNHYKTRHLKVKSSGKFAVRASLSGDSVVTLLDYGAGNVRSVRNAIRYLGFDIKDVQTPEDILNAKRLIFPGVGAFAPAMDVLNSKGMAEAICSYIENDRPFLGICLGLQLLFESSEENGPVKGLGLIPGVVGRFDSSNGFRVPHIGWNALEISEDSEILDEISNRHVYFVHSYRAMPSDKNKEWISSTCSYGDRFIASVRRGNVHAVQFHPEKSGEVGLSVLRRFLFPKSTVTKKPNEGKASRLAKRVIACLDVRTNDQGDLVVTKGDQYDVREQTEENEVRNLGKPVELAGQYYKDGADEVSFLNITGFRDFPLGDLPMLQVLRYTSENVFVPLTVGGGIRDFKDANGRHYSSLEVASEYFRSGADKISIGSDAVYAAEEYLRTGVKTGKTSLEQISKVYGNQAVVVSIDPRRVYLKSPDDVEFKVIRVTNPGPNGEEYAWYQCTVSGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDTDLVKLISDSVSIPVIASSGAGCPDHFSEVFNKTNASAALAAGIFHRKEVPIQSVKEHLFKEGIEVRM 1004
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4906718 4919775 - Cp4.1LG06g08720.1 Cpe06g00777 471557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe06g00777 1004 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE HISHF 487 1004 - -
Cpe06g00777 1004 PANTHER IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H 487 1004 - -
Cpe06g00777 1004 CDD STKc_MAPKKK 3 258 - -
Cpe06g00777 1004 ProSitePatterns Serine/Threonine protein kinases active-site signature. 122 134 IPR008271 GO:0004672|GO:0006468
Cpe06g00777 1004 SMART serkin_6 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00777 1004 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 475 683 - -
Cpe06g00777 1004 ProSiteProfiles Protein kinase domain profile. 3 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00777 1004 TIGRFAM IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 476 674 IPR010139 GO:0000105|GO:0016763
Cpe06g00777 1004 CDD HisF 694 995 IPR004651 GO:0000105|GO:0000107
Cpe06g00777 1004 Hamap Imidazole glycerol phosphate synthase subunit HisH [hisH]. 475 676 IPR010139 GO:0000105|GO:0016763
Cpe06g00777 1004 SUPERFAMILY Class I glutamine amidotransferase-like 475 675 IPR029062 -
Cpe06g00777 1004 SUPERFAMILY Ribulose-phoshate binding barrel 691 1003 IPR011060 -
Cpe06g00777 1004 Gene3D Transferase(Phosphotransferase) domain 1 3 313 - -
Cpe06g00777 1004 Pfam Histidine biosynthesis protein 695 986 IPR006062 GO:0000105
Cpe06g00777 1004 SUPERFAMILY Protein kinase-like (PK-like) 6 302 IPR011009 -
Cpe06g00777 1004 CDD GATase1_IGP_Synthase 476 674 IPR010139 GO:0000105|GO:0016763
Cpe06g00777 1004 ProSitePatterns Protein kinases ATP-binding region signature. 9 32 IPR017441 GO:0005524
Cpe06g00777 1004 Pfam Protein kinase domain 7 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe06g00777 1004 Gene3D - 472 696 IPR029062 -
Cpe06g00777 1004 ProSiteProfiles CobBQ-type GATase domain profile. 467 666 - -
Cpe06g00777 1004 TIGRFAM hisF: imidazoleglycerol phosphate synthase, cyclase subunit 692 1003 IPR004651 GO:0000105|GO:0000107
Cpe06g00777 1004 Pfam Glutamine amidotransferase class-I 478 673 IPR017926 -
Cpe06g00777 1004 Gene3D Aldolase class I 697 1004 IPR013785 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe02g00781 Cpe06g00777 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe02g00782 Cpe-Chr2:4988119 Cpe06g00777 Cpe-Chr6:4906718 0 dispersed
Cpe06g00777 Cpe-Chr6:4906718 Cpe16g00429 Cpe-Chr16:5648554 4.27E-97 dispersed
Cpe10g00777 Cpe-Chr10:4420219 Cpe06g00777 Cpe-Chr6:4906718 6.88E-89 wgd
Cpe19g00953 Cpe-Chr19:6785473 Cpe06g00777 Cpe-Chr6:4906718 7.22E-93 wgd
Cpe02g00781 Cpe-Chr2:4975137 Cpe06g00777 Cpe-Chr6:4906718 0 wgd
Cpe05g01434 Cpe-Chr5:10022802 Cpe06g00777 Cpe-Chr6:4906718 1.83E-95 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62480 PF00977 His_biosynth 9.40E-44 CL0036 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe06g00777 K01663 - csv:101205184 1084.32