Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00488 ATGAATTTCAAGGATTTTGGGAGTGACCCATCTGCTGGAAACGGCGGAGGAGGTGGGCGGCCTTCTGCTAACCATCCATTAGCGCGGCAATCATCTATCTACTCGCTGACATTCGATGAGTTTCAGAATGGGAATATTGTTGCTTCTGGTTTGCAACAGAGGCAGCAAACTCTTGGGGAGATGACACTTGAAGAATTTTTGTTGAGAGCTGGAGTTGTGAGAGAGGATACTCAATTGAATGGATGCCCCAACAATGGAGGATTCTTTGGCAATAACAATCATATTCCAATTCAATCTTCGAACTTATTGTTGAATGTTAATGGAGTTAGAGCACATCAGCCACAACCAATATTTCCAAAGCAGCCTACTGAGACCACATATGGGTCTCAGCTGCCTTTGTCTAGTGATGGGATTATGGGGCTTGCGGATCAAAGGTTGAGCTCAAATTTGATGCAAGGCTCTGCACTGCAGGGTGGAAGGATGGGAGTGGTTAGCTTAGCAGCTGGGGCTATGCCTGTTGCAACAGGATCTCCAGCAAACCAGCTATCATCTGATGGGATTGGAAAGAGCAATGGTGATACCTCGTCCTTGTCTCCGGTGCCTTATGCGCTTAATGGAGTGCGGGGGAGGAGATGTAATGGGACTCTGGACAGGGTTGTCGAGAGGAGGCAGCGCAGAATGATAAAGAACAGGGAGTCGGCTGCTCGATCGCGGGCTCGAAAGCAGGCAGAAATCATGGAAATGCACAAGAACCGGGTGTTGGATTTGGTTCTAAGTGGGTCGATCATAAGGACTTCGATCGATCGCTTTCGAACGAACGCAAAGCATGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCGACGACGGTCGAGTAAATGGCAATCCTGAAAGCAGGATTGAAGAGGCTTACACGATTGAGCTGGAAGCGGAGGTGGCGAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCAGACTGCGGAGGTGGCGAAGCTAAAAGAGGAGAACCAAGAACTCCGGCAAAAACAGGCAGAAATCATGGAAATGCACAAGAACCGGGCATTGAAAGTAATGGATACACAACAAGGAACAAAGAAACGATGCTTAAGACGAACGCTGACTGGTGTTGGATTTGGTTCTAAGTGGGTCGATCATAAGGACTTCGATCGATCGCTTTCGAACGAACGCAAAGCATGCGTTGTTCGATTCATACAGCTCCTCCACCCTCCTATGGCGCTGCTGCTGCTGCGACGACGGTCGAGTAAATGGCAATCCTGA 1392 48.56 MNFKDFGSDPSAGNGGGGGRPSANHPLARQSSIYSLTFDEFQNGNIVASGLQQRQQTLGEMTLEEFLLRAGVVREDTQLNGCPNNGGFFGNNNHIPIQSSNLLLNVNGVRAHQPQPIFPKQPTETTYGSQLPLSSDGIMGLADQRLSSNLMQGSALQGGRMGVVSLAAGAMPVATGSPANQLSSDGIGKSNGDTSSLSPVPYALNGVRGRRCNGTLDRVVERRQRRMIKNRESAARSRARKQAEIMEMHKNRVLDLVLSGSIIRTSIDRFRTNAKHALFDSYSSSTLLWRCCCCDDGRVNGNPESRIEEAYTIELEAEVAKLKEENQELRQKQAEIMEMHKNRALKVMDTQQGTKKRCLRRTQTAEVAKLKEENQELRQKQAEIMEMHKNRALKVMDTQQGTKKRCLRRTLTGVGFGSKWVDHKDFDRSLSNERKACVVRFIQLLHPPMALLLLRRRSSKWQS 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3178920 3183758 + Cp4.1LG07g05160.1 Cpe07g00488 472295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 100 249 - -
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 308 364 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 44 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 365 414 - -
Cpe07g00488 463 Coils Coil 308 342 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 308 364 - -
Cpe07g00488 463 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 46 81 - -
Cpe07g00488 463 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 225 240 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 Gene3D - 220 260 - -
Cpe07g00488 463 Pfam bZIP transcription factor 222 248 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 MobiDBLite consensus disorder prediction 1 26 - -
Cpe07g00488 463 SUPERFAMILY Leucine zipper domain 222 250 IPR046347 GO:0003700|GO:0006355
Cpe07g00488 463 SMART brlzneu 218 283 IPR004827 GO:0003700|GO:0006355
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 7 44 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 365 414 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 100 249 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 46 81 IPR043452 GO:0003700|GO:0045893
Cpe07g00488 463 Coils Coil 360 390 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00488 Cpe11g00148 CCT
Cpe07g00488 Cpe11g00148 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00488 Cpe-Chr7:3178920 Cpe16g00807 Cpe-Chr16:7853892 2.68E-08 dispersed
Cpe11g00148 Cpe-Chr11:816688 Cpe07g00488 Cpe-Chr7:3178920 1.35E-14 wgd
Cpe15g00484 Cpe-Chr15:5830895 Cpe07g00488 Cpe-Chr7:3178920 2.31E-10 wgd
Cpe04g00286 Cpe-Chr4:3565748 Cpe07g00488 Cpe-Chr7:3178920 5.25E-09 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49749 PF00170 bZIP_1 4.20E-07 CL0018 Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00488 K14432 - csv:101223043 290.041