Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe07g00555 ATGAGTACGAAATCGGATTTAGAGTTCAGAGCGACAATTGAGATGGTACTGACAAGACCTGGCAGGAACAGAAGTTTCAACAGAGAGAATCCAGATATTTTGATTACGATGACTGCAGTGGATCAGAAAATAAGCGGTCGTGAGAAGGACAAAGGAGATGGCACAGAGAGGACATGGGCCATCAGCCTTAAACAAAGAGTGAGTGGTTCTCCAAACTTGCACCTTTTATGGAGAAACAAAAGCCAATTCGAGAGTGACTTGGGGAATGCTCTGGTGAATATGGCCAGTACAAATTCTGTCATTGTAGGTGACATTCTGCCTCTTCGCACTCCAATTGCAGCTGGATTTCCTATCCTTTTGACTCTGCGGGAATCTGGATGCCCTGCTACTGATGCAGATGATCATATAGTTGATCAATTGGGGTTCTTAGGCTCTTCTCCAATGTCCACTGCCCCGCAACCGAACGATTTGGGGGATGTTTCCGGAGGTTGTTTGAATTTCTCTGGTAATGCTGAGTTTCAAGATCAGCTAGCAGGAGCAATTCCTATTGCTTCTGTTTCTCCAGTGAATGCAAAAGATTCAGCATTTTCAGCCCCTCAGTTCCAGCAATTAGGGACTTTTAGAACTCGCTTCGAACACAGTTCCTCTAATGCTTCGAACTCTTCATTTGCAAGTTCTCTAAACTGTGAAGGTGACGAGTCTCTATGTAATGCAAATAACGAGTGGGAAAACGGTCATTTTCTTTATAATCAGCCAATTGCTAGGGATAATCCAGTAAGATCAGATTTCCAGACCATTTCATCGATGGAGAACCTGGTTCAGAATGGCTGGATGCCATCCAACACTATGAACTCCAAGTTATGGAATGAGCTTTCTCTGAGTCTTGCCACATCCGAACCTGTGATCGTTGGAGGAACCAATTTCCTGGACCAGTATTCACAGTTGACTTTTCCTGGTGCTACTCAGCCTTGCTTGAACAACACAGAATTAGCCTGCAACTCCATGGATCTCTCTCTAAGTTACAATTATGGTAGTAGTCCTGTTCATCCCTCTCAAGCAATATCAGGATCAAGATATCTTTCCGTCATTCAGGACATACTTTCCCAAATTGCAAGCTATCCACTGGAAAGTTCAGATCAAGTTAGCCATTCATCAACCACAGTTGGATTTGTGCCATTCTCATCAAGTTCCCTGGAGACTCAATGGCCGAAATCATCTGGTGATGCCAAGAGATCCCATCTGTTGACTTTACAACAACTGATTGATGAGAGGTACACTCAATGCTTGGACGAGATTCATACTGTTACATCTGCATTTCATGCTGCCTCCAATTTGGATCCTCGCTTGCATTCTCATTATACTTACCAGACAATCACTTCTGTGTATAAAAGCCTGAGGGAGAAGATTACTAATTGTATCCTTGCAATGGGAATGCATTCTAACACAGTCTGCACCAAGGAGAAGGAAAAGTCCTTCGAGACAACGTTCATTCGGAAGCAGTGGGCTCTCCAGCAGTTGAAAAGGAAAGATAATCAATTATGGAGGGCACAGAGAGGCTTGCCTGAAAACTCTGTCTCAGTTCTAAGGGCGTGGATGTTTCAGAACTTTCTCCATCCGTACCCCAAGGACACAGAGAAGCACTTACTTGCAGTAAAAAGTGGATTAACCAGAAATCAGGTATCTAATTGGTTTATCAATGCACGTGTCCGGTTGTGGAAACCGATGATCGAAGAAATGTATGCTGAAATGAGCAGAAGAAAATCCTTTCAAAATGATTTAGGATGA 1785 43.36 MSTKSDLEFRATIEMVLTRPGRNRSFNRENPDILITMTAVDQKISGREKDKGDGTERTWAISLKQRVSGSPNLHLLWRNKSQFESDLGNALVNMASTNSVIVGDILPLRTPIAAGFPILLTLRESGCPATDADDHIVDQLGFLGSSPMSTAPQPNDLGDVSGGCLNFSGNAEFQDQLAGAIPIASVSPVNAKDSAFSAPQFQQLGTFRTRFEHSSSNASNSSFASSLNCEGDESLCNANNEWENGHFLYNQPIARDNPVRSDFQTISSMENLVQNGWMPSNTMNSKLWNELSLSLATSEPVIVGGTNFLDQYSQLTFPGATQPCLNNTELACNSMDLSLSYNYGSSPVHPSQAISGSRYLSVIQDILSQIASYPLESSDQVSHSSTTVGFVPFSSSSLETQWPKSSGDAKRSHLLTLQQLIDERYTQCLDEIHTVTSAFHAASNLDPRLHSHYTYQTITSVYKSLREKITNCILAMGMHSNTVCTKEKEKSFETTFIRKQWALQQLKRKDNQLWRAQRGLPENSVSVLRAWMFQNFLHPYPKDTEKHLLAVKSGLTRNQVSNWFINARVRLWKPMIEEMYAEMSRRKSFQNDLG 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 3675794 3680767 - Cp4.1LG07g06190.1 Cpe07g00555 472362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe07g00555 594 SUPERFAMILY Homeodomain-like 518 583 IPR009057 -
Cpe07g00555 594 SMART prehox3 348 471 IPR006563 -
Cpe07g00555 594 SMART HOX_1 514 578 IPR001356 GO:0003677
Cpe07g00555 594 CDD homeodomain 514 575 IPR001356 GO:0003677
Cpe07g00555 594 ProSiteProfiles 'Homeobox' domain profile. 511 574 IPR001356 GO:0003677
Cpe07g00555 594 Pfam Homeobox KN domain 531 570 IPR008422 GO:0003677|GO:0006355
Cpe07g00555 594 PANTHER HOMEOBOX PROTEIN ATH1 157 591 - -
Cpe07g00555 594 Pfam Associated with HOX 354 470 IPR006563 -
Cpe07g00555 594 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 157 591 - -
Cpe07g00555 594 Gene3D - 517 579 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00555 Cpe11g00080 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00555 Cpe-Chr7:3675794 Cpe03g00311 Cpe-Chr3:1597464 2.50E-44 dispersed
Cpe11g00080 Cpe-Chr11:425117 Cpe07g00555 Cpe-Chr7:3675794 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
49760 PF07526 POX 1.90E-15 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe07g00555 - - mcha:111004597 699.893