Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe08g00516 ATGCGTGATTCAATCCCACTCTACTCTTCCCCCATCCGGACGGTGGATAATTCGCCTCTGCTTGGCTATTCCGTCGCCGATGGATTCTTCCGATCGCGAGGGTTTATTCGTCGTTCGCCTCAGCCTCTTCGTGGTGCGGTTCGTCTTCTCCGCCGTGCAAGTGGCCGGCAGATGATGCTTCAAGAGCCCTCCGTTCGTGTTCGTGAAACCGCCGCCGAGCAGCTGGAGGAACGGCAGAGTGATTGGGCGTACTCGAAGCCGATAATCCTCTTGGACCTTCTATGGAACTTGGTTTTCGTCGCCATTAGTTTCACTATCCTAGGGCTCAGCACGAGCGAAAATCCTTCTGTGCCGCTTAGGTTTTGGATCATCGGATATGCTTTGCAGTGTATAATTCACATGTCCTGTGTTGCAGCTGAGTATAAGCGGCGGCACTTGACGAGAGACCCCGCCAGATTGGAGCGTGGCAGCGACTGGATGAGCGGCGATGACTCGAATTCCGCCTCTGGAAGTGATGGAGATGAAGAACTTACCGTGAATGAAGAAGAACCAAGCAATCTTGTGAAGCATATTGAGTCTGCAAATACCTTGTTCTCTTTCATCTGGTGGCTGCTAGGATTTTACTGGGTCACTACTGGAGGCCAAGAATTGATTGATGATTCACCTCAGCTATACTGGCTTTGTATTACATTCCTTGCTTTCGACGTCGTGTTTGTTCTGATTTGCGTCGCAATTGCCTGTCTTGTTGGTGTTGCTATTTGCTGCTGTCTTCCTTGCATAATTGCTATCTTGTATGCGGTTACCGATCAGGAAGGAGCAACGAAGGAGGAGATCGATCGCTTACCGAAGTACATATTCAACAGAACATGTGATGTTGAGAAAGGGATTGGTGATACTCAAGAATCTACTGGAGGAATAATGACTAAATGTGACACTGATGCACCTACCAAGCATTTTCTTCGCCCCGAAGATTCTGAGTGTAGCATCTGCCTCAGTGCTTACGAAAACGAAACGGAGCTACGAGAGCTGCCCTGTAACCACCATTTCCACTGCAACTGCATCGACAAATGGCTACACATCAATGCAACCTGCCCGCTCTGCAAGTTCAACATATTGAAGCCGAACGGTTCCAGTAGCGAAGAAGTGTGA 1149 49.26 MRDSIPLYSSPIRTVDNSPLLGYSVADGFFRSRGFIRRSPQPLRGAVRLLRRASGRQMMLQEPSVRVRETAAEQLEERQSDWAYSKPIILLDLLWNLVFVAISFTILGLSTSENPSVPLRFWIIGYALQCIIHMSCVAAEYKRRHLTRDPARLERGSDWMSGDDSNSASGSDGDEELTVNEEEPSNLVKHIESANTLFSFIWWLLGFYWVTTGGQELIDDSPQLYWLCITFLAFDVVFVLICVAIACLVGVAICCCLPCIIAILYAVTDQEGATKEEIDRLPKYIFNRTCDVEKGIGDTQESTGGIMTKCDTDAPTKHFLRPEDSECSICLSAYENETELRELPCNHHFHCNCIDKWLHINATCPLCKFNILKPNGSSSEEV 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 3336974 3340525 + Cp4.1LG08g01630.1 Cpe08g00516 473482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe08g00516 382 MobiDBLite consensus disorder prediction 155 180 - -
Cpe08g00516 382 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 307 375 IPR013083 -
Cpe08g00516 382 SUPERFAMILY RING/U-box 318 374 - -
Cpe08g00516 382 PANTHER TARGET OF ERK KINASE MPK-1 29 378 - -
Cpe08g00516 382 CDD RING-H2_RNF111_like 326 370 - -
Cpe08g00516 382 Pfam Ring finger domain 326 368 IPR001841 -
Cpe08g00516 382 SMART ring_2 327 367 IPR001841 -
Cpe08g00516 382 MobiDBLite consensus disorder prediction 160 174 - -
Cpe08g00516 382 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 29 378 - -
Cpe08g00516 382 ProSiteProfiles Zinc finger RING-type profile. 327 368 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe08g00516 Cpe14g00834 CCT
Cpe03g01711 Cpe08g00516 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00261 Cpe-Chr7:1697248 Cpe08g00516 Cpe-Chr8:3336974 3.22E-46 dispersed
Cpe08g00516 Cpe-Chr8:3336974 Cpe08g00793 Cpe-Chr8:6289601 6.95E-148 dispersed
Cpe11g00569 Cpe-Chr11:3372677 Cpe08g00516 Cpe-Chr8:3336974 1.79E-45 dispersed
Cpe20g00235 Cpe-Chr20:1342753 Cpe08g00516 Cpe-Chr8:3336974 6.17E-13 dispersed
Cpe03g01711 Cpe-Chr3:13000644 Cpe08g00516 Cpe-Chr8:3336974 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe08g00516 - - csv:101205399 662.144