Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe10g00052 ATGACTTCCTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCTGGACATTCTATGGCACCCCCTGCTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACGGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA 618 42.56 MTSSVHDYSDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPAYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN 205
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 342802 350979 + Cp4.1LG10g06460.1 Cpe10g00052 475589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe10g00052 205 SMART cbf3 110 171 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 MobiDBLite consensus disorder prediction 1 35 - -
Cpe10g00052 205 MobiDBLite consensus disorder prediction 129 148 - -
Cpe10g00052 205 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 113 168 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PRINTS CCAAT-binding transcription factor subunit B signature 114 136 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PRINTS CCAAT-binding transcription factor subunit B signature 145 168 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 MobiDBLite consensus disorder prediction 162 205 - -
Cpe10g00052 205 ProSitePatterns NF-YA/HAP2 subunit signature. 116 136 IPR018362 GO:0003677|GO:0016602
Cpe10g00052 205 Gene3D - 111 172 - -
Cpe10g00052 205 MobiDBLite consensus disorder prediction 170 205 - -
Cpe10g00052 205 ProSiteProfiles NF-YA/HAP2 family profile. 111 171 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 1 190 IPR001289 GO:0003700|GO:0006355
Cpe10g00052 205 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 1 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00493 Cpe-Chr5:2909784 Cpe10g00052 Cpe-Chr10:342802 4.14E-38 dispersed
Cpe07g01068 Cpe-Chr7:9496367 Cpe10g00052 Cpe-Chr10:342802 1.12E-32 dispersed
Cpe10g00052 Cpe-Chr10:342802 Cpe11g01190 Cpe-Chr11:9734654 3.03E-38 dispersed
Cpe10g00052 Cpe-Chr10:342802 Cpe19g01172 Cpe-Chr19:7895436 5.91E-128 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50061 PF02045 CBFB_NFYA 4.20E-26 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe10g00052 K08064 - csv:101205549 367.466