Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe10g00052 | ATGACTTCCTCTGTCCACGATTATTCTGATAATGGTGAGGCTGATGATCAGCAAAAGTACTCTGATTCTCACAATCATTCTTCATCAGTCATAAATGGACTAAATCAACCCATCATCACAACCCCAAATCAGTATGTAGCACCTCCTCAAGTTGGAGCTGGACATTCTATGGCACCCCCTGCTTATCCATTTCCAGATCCTTATTACAGAAGCATCTTCACTCCCTATGACTCTCAACCATATCCTCCACAGCCCTATGGTGGGCAACCTATGGTTCATCTTCAATTAATGGGAATTCAGCAAGCTGGGGTTCCTTTGCCAACGGATGCAGTTGAGGAGCCTGTTTTTGTGAATGCTAAGCAGTATCATGGCATTTTACGACGTCGACAATCCCGTGCCAAAGCTGAATCAGAAAATAAAGCTCTAAAGTCTAGGAAGCCCTACTTGCATGAATCTCGACATTTGCATGCATTGAGGAGAGCTAGAGGTTGTGGTGGTCGGTTTCTCAAATCAAATAAGAATGAGAACCAACAAAAAGAAGTGGCATCAGGTGATAAGTCACAGCCAAATATAAATCTGAATTCTGATAAAAGTGATCTTGCTTCTTCAGAGAACTGA | 618 | 42.56 | MTSSVHDYSDNGEADDQQKYSDSHNHSSSVINGLNQPIITTPNQYVAPPQVGAGHSMAPPAYPFPDPYYRSIFTPYDSQPYPPQPYGGQPMVHLQLMGIQQAGVPLPTDAVEEPVFVNAKQYHGILRRRQSRAKAESENKALKSRKPYLHESRHLHALRRARGCGGRFLKSNKNENQQKEVASGDKSQPNINLNSDKSDLASSEN | 205 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 342802 | 350979 | + | Cp4.1LG10g06460.1 | Cpe10g00052 | 475589 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe10g00052 | 205 | SMART | cbf3 | 110 | 171 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
Cpe10g00052 | 205 | MobiDBLite | consensus disorder prediction | 129 | 148 | - | - | |
Cpe10g00052 | 205 | Pfam | CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B | 113 | 168 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | PRINTS | CCAAT-binding transcription factor subunit B signature | 114 | 136 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | PRINTS | CCAAT-binding transcription factor subunit B signature | 145 | 168 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | MobiDBLite | consensus disorder prediction | 162 | 205 | - | - | |
Cpe10g00052 | 205 | ProSitePatterns | NF-YA/HAP2 subunit signature. | 116 | 136 | IPR018362 | GO:0003677|GO:0016602 | |
Cpe10g00052 | 205 | Gene3D | - | 111 | 172 | - | - | |
Cpe10g00052 | 205 | MobiDBLite | consensus disorder prediction | 170 | 205 | - | - | |
Cpe10g00052 | 205 | ProSiteProfiles | NF-YA/HAP2 family profile. | 111 | 171 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | PANTHER | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED | 1 | 190 | IPR001289 | GO:0003700|GO:0006355 | |
Cpe10g00052 | 205 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-7 | 1 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe05g00493 | Cpe-Chr5:2909784 | Cpe10g00052 | Cpe-Chr10:342802 | 4.14E-38 | dispersed | |
Cpe07g01068 | Cpe-Chr7:9496367 | Cpe10g00052 | Cpe-Chr10:342802 | 1.12E-32 | dispersed | |
Cpe10g00052 | Cpe-Chr10:342802 | Cpe11g01190 | Cpe-Chr11:9734654 | 3.03E-38 | dispersed | |
Cpe10g00052 | Cpe-Chr10:342802 | Cpe19g01172 | Cpe-Chr19:7895436 | 5.91E-128 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50061 | PF02045 | CBFB_NFYA | 4.20E-26 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe10g00052 | K08064 | - | csv:101205549 | 367.466 |