Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe11g00234 ATGAAGATTCTGTGTGATGTCTGTGAAAATGCGGAAGCGGTGGTGTTCTGCACGGCGGATGAGGCGGCGCTCTGTAATTTATGCGATCACCGTGTCCACAATGCTAATAAGCTCGCTTCGAAGCACCGCCGCTTTTCTCTGCTCCGCTCTGATGCGGCGGAGGCCCCAGTCTGCGATGTGTGCCGGGAGCGGCGAGGATTCTTGTTCTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAATGCGATGATCCAATTCATTCGGCCAACGAACTCACTATGAAGCACGATAGGTTTCTTCAGATTGGGATTAAGCTTTCCGCCACCGCTACTCTGTACGAACCGCCTCCCTCCGGGGAGAAACCGATCGGGAGTGGTGGTCGTGTTGTTTCTAAATCTAAATTAAAGGGCTCTGTCAAGAAGGCGGATGCTATTTCTAGTGCTCCAACGGTATGCACAACAAGTGTTTGTGTAAATGCCCCAACGAACTTAACTCCAACGACAGCCGTGAATGAGGGCGGCGGAGGTCAGATTGCGACTGAGGACGGTGGATCAGCTAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCCATTTGAAGAGTTTCTGGAGTTTGAAGGGGTGGGGTTTCCATTTTCATCATCGGAAGGCTTGGAGCCTTGGGTCCCTCGGGGGCCACCAGCGGCGCTGTTTGGGTTGAAGGACACGAAGGCATTGGCAGTGAATTCATCAAAAGTGAATAGAGTGTGGACAGACGATGGTTTCACTGTGCCACAGATTATTAATACAGCCCCATCTGCAGGCTTTAAGAGGTCCAGACCTTTTTCATAA 837 51.25 MKILCDVCENAEAVVFCTADEAALCNLCDHRVHNANKLASKHRRFSLLRSDAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLQIGIKLSATATLYEPPPSGEKPIGSGGRVVSKSKLKGSVKKADAISSAPTVCTTSVCVNAPTNLTPTTAVNEGGGGQIATEDGGSASSISEYLMETLPGWPFEEFLEFEGVGFPFSSSEGLEPWVPRGPPAALFGLKDTKALAVNSSKVNRVWTDDGFTVPQIINTAPSAGFKRSRPFS 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1265779 1267564 + Cp4.1LG11g02190.1 Cpe11g00234 477028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe11g00234 278 CDD Bbox1_BBX-like 4 47 - -
Cpe11g00234 278 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Cpe11g00234 278 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Cpe11g00234 278 Pfam B-box zinc finger 54 96 IPR000315 GO:0008270
Cpe11g00234 278 CDD Bbox1_BBX-like 57 99 - -
Cpe11g00234 278 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Cpe11g00234 278 PANTHER B-BOX ZINC FINGER PROTEIN 21 1 208 - -
Cpe11g00234 278 SMART bboxneu5 4 47 IPR000315 GO:0008270
Cpe11g00234 278 SMART bboxneu5 53 100 IPR000315 GO:0008270
Cpe11g00234 278 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 208 - -
Cpe11g00234 278 Gene3D Classic Zinc Finger 1 94 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe07g00385 Cpe11g00234 CCT
Cpe07g00385 Cpe11g00234 ECH
Cpe02g00094 Cpe11g00234 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe11g00234 Cpe-Chr11:1265779 Cpe14g00359 Cpe-Chr14:2185559 3.53E-36 dispersed
Cpe10g00649 Cpe-Chr10:3738125 Cpe11g00234 Cpe-Chr11:1265779 3.53E-23 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe15g00559 Cpe-Chr15:6419234 3.39E-53 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe16g00269 Cpe-Chr16:4700975 1.62E-46 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe19g00845 Cpe-Chr19:6255132 1.33E-23 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe02g00094 Cpe-Chr2:475486 8.97E-56 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe04g00107 Cpe-Chr4:966757 6.46E-54 wgd
Cpe11g00234 Cpe-Chr11:1265779 Cpe07g00385 Cpe-Chr7:2483126 4.01E-132 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50213 PF00643 zf-B_box 1.70E-05 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe11g00234 - - cmax:111492300 520.776