Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cpe11g00234 | ATGAAGATTCTGTGTGATGTCTGTGAAAATGCGGAAGCGGTGGTGTTCTGCACGGCGGATGAGGCGGCGCTCTGTAATTTATGCGATCACCGTGTCCACAATGCTAATAAGCTCGCTTCGAAGCACCGCCGCTTTTCTCTGCTCCGCTCTGATGCGGCGGAGGCCCCAGTCTGCGATGTGTGCCGGGAGCGGCGAGGATTCTTGTTCTGTCAGCAGGATAGAGCGATTCTGTGTAGAGAATGCGATGATCCAATTCATTCGGCCAACGAACTCACTATGAAGCACGATAGGTTTCTTCAGATTGGGATTAAGCTTTCCGCCACCGCTACTCTGTACGAACCGCCTCCCTCCGGGGAGAAACCGATCGGGAGTGGTGGTCGTGTTGTTTCTAAATCTAAATTAAAGGGCTCTGTCAAGAAGGCGGATGCTATTTCTAGTGCTCCAACGGTATGCACAACAAGTGTTTGTGTAAATGCCCCAACGAACTTAACTCCAACGACAGCCGTGAATGAGGGCGGCGGAGGTCAGATTGCGACTGAGGACGGTGGATCAGCTAGTAGCATATCGGAATATTTGATGGAGACGCTTCCTGGGTGGCCATTTGAAGAGTTTCTGGAGTTTGAAGGGGTGGGGTTTCCATTTTCATCATCGGAAGGCTTGGAGCCTTGGGTCCCTCGGGGGCCACCAGCGGCGCTGTTTGGGTTGAAGGACACGAAGGCATTGGCAGTGAATTCATCAAAAGTGAATAGAGTGTGGACAGACGATGGTTTCACTGTGCCACAGATTATTAATACAGCCCCATCTGCAGGCTTTAAGAGGTCCAGACCTTTTTCATAA | 837 | 51.25 | MKILCDVCENAEAVVFCTADEAALCNLCDHRVHNANKLASKHRRFSLLRSDAAEAPVCDVCRERRGFLFCQQDRAILCRECDDPIHSANELTMKHDRFLQIGIKLSATATLYEPPPSGEKPIGSGGRVVSKSKLKGSVKKADAISSAPTVCTTSVCVNAPTNLTPTTAVNEGGGGQIATEDGGSASSISEYLMETLPGWPFEEFLEFEGVGFPFSSSEGLEPWVPRGPPAALFGLKDTKALAVNSSKVNRVWTDDGFTVPQIINTAPSAGFKRSRPFS | 278 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 1265779 | 1267564 | + | Cp4.1LG11g02190.1 | Cpe11g00234 | 477028 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cpe11g00234 | 278 | CDD | Bbox1_BBX-like | 4 | 47 | - | - | |
Cpe11g00234 | 278 | ProSiteProfiles | Zinc finger B-box type profile. | 1 | 47 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | Pfam | B-box zinc finger | 4 | 44 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | Pfam | B-box zinc finger | 54 | 96 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | CDD | Bbox1_BBX-like | 57 | 99 | - | - | |
Cpe11g00234 | 278 | ProSiteProfiles | Zinc finger B-box type profile. | 53 | 100 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | PANTHER | B-BOX ZINC FINGER PROTEIN 21 | 1 | 208 | - | - | |
Cpe11g00234 | 278 | SMART | bboxneu5 | 4 | 47 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | SMART | bboxneu5 | 53 | 100 | IPR000315 | GO:0008270 | |
Cpe11g00234 | 278 | PANTHER | B-BOX ZINC FINGER PROTEIN 22 | 1 | 208 | - | - | |
Cpe11g00234 | 278 | Gene3D | Classic Zinc Finger | 1 | 94 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cpe07g00385 | Cpe11g00234 | CCT | |
Cpe07g00385 | Cpe11g00234 | ECH | |
Cpe02g00094 | Cpe11g00234 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe14g00359 | Cpe-Chr14:2185559 | 3.53E-36 | dispersed | |
Cpe10g00649 | Cpe-Chr10:3738125 | Cpe11g00234 | Cpe-Chr11:1265779 | 3.53E-23 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe15g00559 | Cpe-Chr15:6419234 | 3.39E-53 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe16g00269 | Cpe-Chr16:4700975 | 1.62E-46 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe19g00845 | Cpe-Chr19:6255132 | 1.33E-23 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe02g00094 | Cpe-Chr2:475486 | 8.97E-56 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe04g00107 | Cpe-Chr4:966757 | 6.46E-54 | wgd | |
Cpe11g00234 | Cpe-Chr11:1265779 | Cpe07g00385 | Cpe-Chr7:2483126 | 4.01E-132 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
50213 | PF00643 | zf-B_box | 1.70E-05 | No_clan | Cpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cpe11g00234 | - | - | cmax:111492300 | 520.776 |