Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe13g00070 ATGGAGGAGAAAGAGGGAGTGGATTTTGGATTTGCAGTAGAAGTGAGCCAAGCTCCAGAGAGCTTAGGAATGATGGATTCGAGACCTGAAAATACAAGCACAGATAGTGAGTCACCGCCGCCGCAGCCGCTGGCGAGTGTTCCAACGGTGGCGGCTACAGATGGGAAGAAGAAAAGAGGGAGGCCGAGAAAGTACGGTCCCAATGGGACTGTAGCTCCAACTTTGTCGCCAATGCCGATTTCGTCTTCGATTCCGCTGAGTGGAGAATTTCCGGTTTGGAAACGGGGAAGAGGGCGGTCAGTAGAGTCGATTAAGAAGCCGCGACGAGGGTACGAATTTGAGATTCCAGGTAATATGTTCTTGGTTTTTCTTGAAATTTATGCTGATTTTCGTCATGGTAACAAGGTTGCCTTCATTGCTGGAGCAGATTTCACACCTCACGTGATCACTGTTAATATTGGTGAGGGTCGATTTGAGATACTTTCGTTGTCTGGATCATATATGCCTTCTGAGAGCGGTGGAACAAAGAGCCGATCTCGAGGGGTGAGTGTTTCTTTGGCTGGCTCAGATGGCCGAGTGATGGGTGGAGAACTTGCCGGCATGCTGATAGCAGCTGGTCCAGTACAGGTGGTGGTGGGCAGTTTCCTACCACCAGTTCACCAGAAGGAACATAAACCAAAGAAGAGTAGGATGGAACCTAAATCGAACGCAATTTTACCACCAGCCGATGTTCTTTCTGGCGAAGGGACGAACGGAGTCCTTGGCGGAGTGGAGGCCATAGTCCCATCTACTCTAACTGAAGATAAACCAGCCTCTTTAGACCAAAATCCAGCTTTTAAAACTCCACAAGTCAACGAAAAGTTACCATTTCCACAAGAATCAAGAGGTGTACTCAACCATTCAAACCATGAGGTTTCTTGTTGA 924 48.27 MEEKEGVDFGFAVEVSQAPESLGMMDSRPENTSTDSESPPPQPLASVPTVAATDGKKKRGRPRKYGPNGTVAPTLSPMPISSSIPLSGEFPVWKRGRGRSVESIKKPRRGYEFEIPGNMFLVFLEIYADFRHGNKVAFIAGADFTPHVITVNIGEGRFEILSLSGSYMPSESGGTKSRSRGVSVSLAGSDGRVMGGELAGMLIAAGPVQVVVGSFLPPVHQKEHKPKKSRMEPKSNAILPPADVLSGEGTNGVLGGVEAIVPSTLTEDKPASLDQNPAFKTPQVNEKLPFPQESRGVLNHSNHEVSC 307
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
13 546126 553123 - Cp4.1LG13g00830.1 Cpe13g00070 479268
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cpe13g00070 307 SUPERFAMILY AF0104/ALDC/Ptd012-like 150 229 - -
Cpe13g00070 307 MobiDBLite consensus disorder prediction 1 78 - -
Cpe13g00070 307 MobiDBLite consensus disorder prediction 268 307 - -
Cpe13g00070 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 155 292 IPR039605 GO:0003680
Cpe13g00070 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 8 155 IPR039605 GO:0003680
Cpe13g00070 307 MobiDBLite consensus disorder prediction 268 282 - -
Cpe13g00070 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 155 292 - -
Cpe13g00070 307 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 8 155 - -
Cpe13g00070 307 Gene3D - 132 234 - -
Cpe13g00070 307 MobiDBLite consensus disorder prediction 221 244 - -
Cpe13g00070 307 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 215 IPR005175 -
Cpe13g00070 307 MobiDBLite consensus disorder prediction 26 40 - -
Cpe13g00070 307 ProSiteProfiles PPC domain profile profile. 83 236 IPR005175 -
Cpe13g00070 307 CDD DUF296 135 215 IPR005175 -
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Cpe05g00713 Cpe13g00070 CCT
Cpe05g00713 Cpe13g00070 ECH
Cpe09g00137 Cpe13g00070 CST
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe08g00855 Cpe-Chr8:6762323 Cpe13g00070 Cpe-Chr13:546126 1.26E-28 dispersed
Cpe09g00137 Cpe-Chr9:808107 Cpe13g00070 Cpe-Chr13:546126 1.77E-59 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe15g00219 Cpe-Chr15:1895199 2.12E-21 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe05g00713 Cpe-Chr5:4376541 3.17E-134 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe13g00070 - - csv:101211908 418.313