Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe14g00057 ATGGTTGATAATTTAGCTGACTTTTTCCAACAAAATGAAGAATTTGTCGACCATACCACAAACCCCCAGTTGGAAGGATATGACCTCTTCAGCATCTTTGATAGTTTGGAGAATGTTGCAGAATTCAGTATGATCGAGGACGACACCGAGCTTGAGACTTCCCCTAAAACCAAGCGCTTGAAACTGAACGGTTCCGCTATGGCTGGTGTCTCTTCCTCAGAGGATGCAAACCCTGATGGAGCACAAAGAATGTCTCACATCACGGTAGAGCGCAACCGTAGGAAGCAAATGAACGAGCACTTGTCGGTGTTGAGATCGCTCATGCCTTGTTTCTATGTCAAGAAAGGAGATCAAGCTTCAATAATTGGAGGGGTGGTGGAATACATCAAAGAGTTGCAACAAGTTCTTCAATCACTAGAGGCCAAAAAGCAAAGGAAAGTGTATAGTGAAGTGTTGAGCCCTAGGGTTGTTTCAAGTCCAAGGCCTTTGCCAATGAGTCCAAGAAAGCCACCACCACTAAGTCCAAATGTGGTTTTGAAGACAGTTTCTGCTCCAATCCCTGGACAAGCTGTTAAGATCATTGCTGCCCTTGAACAACTCTCCCTAGAAATTCTCCATGTCAAGATCACCACCGTTGATGATACCATGTTTAACTCTTTTACAATTAAGATCGGAATTGAATGCCAACTTAGTGCAGAGGAACTGGCTCACCAAATTCAGCAAACATTCTGCTAA 735 43.81 MVDNLADFFQQNEEFVDHTTNPQLEGYDLFSIFDSLENVAEFSMIEDDTELETSPKTKRLKLNGSAMAGVSSSEDANPDGAQRMSHITVERNRRKQMNEHLSVLRSLMPCFYVKKGDQASIIGGVVEYIKELQQVLQSLEAKKQRKVYSEVLSPRVVSSPRPLPMSPRKPPPLSPNVVLKTVSAPIPGQAVKIIAALEQLSLEILHVKITTVDDTMFNSFTIKIGIECQLSAEELAHQIQQTFC 244
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
14 313862 316005 - Cp4.1LG14g06550.1 Cpe14g00057 480441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe14g00057 244 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 132 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 174 244 - -
Cpe14g00057 244 SMART finulus 87 138 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR FAMA 174 244 IPR044283 GO:0003700|GO:0010052
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR FAMA 46 175 IPR044283 GO:0003700|GO:0010052
Cpe14g00057 244 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 80 156 IPR036638 GO:0046983
Cpe14g00057 244 CDD bHLH_AtFAMA_like 84 157 - -
Cpe14g00057 244 Pfam Helix-loop-helix DNA-binding domain 82 133 IPR011598 GO:0046983
Cpe14g00057 244 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 46 175 - -
Cpe14g00057 244 Coils Coil 125 145 - -
Cpe14g00057 244 Gene3D - 73 147 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe09g00043 Cpe14g00057 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe04g00281 Cpe-Chr4:3536936 Cpe14g00057 Cpe-Chr14:313862 8.39E-08 dispersed
Cpe08g00243 Cpe-Chr8:1599539 Cpe14g00057 Cpe-Chr14:313862 1.03E-44 dispersed
Cpe14g00057 Cpe-Chr14:313862 Cpe07g00192 Cpe-Chr7:1197560 1.07E-33 dispersed
Cpe19g00114 Cpe-Chr19:920502 Cpe14g00057 Cpe-Chr14:313862 6.24E-09 dispersed
Cpe14g00057 Cpe-Chr14:313862 Cpe09g00043 Cpe-Chr9:252234 1.11E-20 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
50475 PF00010 HLH 2.50E-12 No_clan Cpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe14g00057 K20558 - csv:101211617 236.498