Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00207 ATGGGGTCTTATGGCAGCCCTAAGACTTGGATACCTTATATGAGCAACAAAGATTGCTCTCAAGGTTTTTGTAGTGTATATTGTCCTCAATGGTGCTACATCATGTTGTCACCTCCACCACCCTTGGAGTTTCCTGATGATGATTCATCCCCAAATTTTTCACCTCTTGTTATAGCAATTATTGGAATTCTAGCAAGTGCTTTCCTTCTTTTAAGCTATTACACCATCATTTCAAAGTATTGTGGCAACACAAATCGCTTGTTTGGAACTGGAAATCATGACCCAAATGAGGAATTTGAAGATAATCATAACCCAACACTTCATGAACCATGGCATGTTGCCACAAATGGCTTGGATGAGGCAATGGTTAAGTCGATTACGATTTGCAAGTACAAGAGAGGAGATGGGTTGGTTGAAGGCTCTGATTGCTCTGTTTGTCTTAGTGAGTTTCAAGAAGATGATAGCCTTAGGTTGTTGCCTAAATGCAGCCATGCTTTTCATCTTCAATGTATTGATACTTGGCTCAAATCACACTCCAATTGCCCGTTATGTCGTGCTAATATCGTCTCTGTCGATGCTTCTCCTCCCGTTCACCTTCCTGCAAGCAATGCATATCCCATAACTAATGAGACCATGCCAGAGACTTCTCAGACACATGACCCTGAGGCTGTTTCACAAGATTCAGAACGAAGTTTCAGAAGTAATTGTGGGAAGAACTCAGTTCGTGCCTTCAGTGACCTCGGAGTACTGGAGAAAAGAGACACTGTCATTGAGCTTAGAGACGGCGAATTGCAGCAAATTAGAAGGTCCATTTCAATGGATCATTGCAGCCAAAATCATATCATTATTGCGGATGTTCTACGTCTAAACGACGACGAGTATGAAGCAGGAAGTTCAGGTGATGTTGGATCATCCAAATGTTCAGTGGGAGAAGACAGCAAGTCCAGCCACAGAAAAACAATCCTGCATTGTGTTATGAGTCCTGTTTCGATTAAGAGATCGTTTTCAAGTGGAAGATTTTCTCTCATTAGGCATGGAAAAGAACACAGGGAAATCGCCCGTGTCTGA 1068 42.23 MGSYGSPKTWIPYMSNKDCSQGFCSVYCPQWCYIMLSPPPPLEFPDDDSSPNFSPLVIAIIGILASAFLLLSYYTIISKYCGNTNRLFGTGNHDPNEEFEDNHNPTLHEPWHVATNGLDEAMVKSITICKYKRGDGLVEGSDCSVCLSEFQEDDSLRLLPKCSHAFHLQCIDTWLKSHSNCPLCRANIVSVDASPPVHLPASNAYPITNETMPETSQTHDPEAVSQDSERSFRSNCGKNSVRAFSDLGVLEKRDTVIELRDGELQQIRRSISMDHCSQNHIIIADVLRLNDDEYEAGSSGDVGSSKCSVGEDSKSSHRKTILHCVMSPVSIKRSFSSGRFSLIRHGKEHREIARV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1711316 1712383 - Cp4.1LG15g02080.1 Cpe15g00207 481665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00207 355 MobiDBLite consensus disorder prediction 210 234 - -
Cpe15g00207 355 CDD RING-H2_PA-TM-RING 142 185 - -
Cpe15g00207 355 SUPERFAMILY RING/U-box 137 193 - -
Cpe15g00207 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 118 193 IPR013083 -
Cpe15g00207 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 265 345 - -
Cpe15g00207 355 PANTHER E3 UBIQUITIN-PROTEIN LIGASE OS04G0590900-LIKE 6 222 - -
Cpe15g00207 355 ProSiteProfiles Zinc finger RING-type profile. 143 185 IPR001841 -
Cpe15g00207 355 Pfam Ring finger domain 142 185 IPR001841 -
Cpe15g00207 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 265 345 IPR044675 -
Cpe15g00207 355 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 222 IPR044675 -
Cpe15g00207 355 SMART ring_2 143 184 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe05g00173 Cpe15g00207 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe03g01624 Cpe-Chr3:12462548 Cpe15g00207 Cpe-Chr15:1711316 1.08E-84 dispersed
Cpe05g00058 Cpe-Chr5:296025 Cpe15g00207 Cpe-Chr15:1711316 1.95E-33 dispersed
Cpe08g00328 Cpe-Chr8:2056645 Cpe15g00207 Cpe-Chr15:1711316 1.51E-36 dispersed
Cpe08g00424 Cpe-Chr8:2703584 Cpe15g00207 Cpe-Chr15:1711316 5.05E-90 dispersed
Cpe11g00454 Cpe-Chr11:2562752 Cpe15g00207 Cpe-Chr15:1711316 1.09E-38 dispersed
Cpe12g00063 Cpe-Chr12:373524 Cpe15g00207 Cpe-Chr15:1711316 4.04E-72 dispersed
Cpe12g00145 Cpe-Chr12:936708 Cpe15g00207 Cpe-Chr15:1711316 2.37E-30 dispersed
Cpe15g00207 Cpe-Chr15:1711316 Cpe17g00262 Cpe-Chr17:1731918 5.45E-69 dispersed
Cpe16g00220 Cpe-Chr16:4360520 Cpe15g00207 Cpe-Chr15:1711316 4.31E-24 dispersed
Cpe17g00190 Cpe-Chr17:1215631 Cpe15g00207 Cpe-Chr15:1711316 5.61E-29 dispersed
Cpe15g00207 Cpe-Chr15:1711316 Cpe04g00372 Cpe-Chr4:4386496 2.35E-44 wgd
Cpe15g00207 Cpe-Chr15:1711316 Cpe05g00173 Cpe-Chr5:912739 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00207 - - cmo:103503554 630.943