Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe15g00219 ATGGATTCACGTGATACTCCACCTCCACCACTTTCTGCACCGTCCAACATGGCGATCGGAGGACCGTCGGCGTATTCAACCGCCATGACCAACGCCAACAACAATGCCTCTTCCAATATGGCTCTCTTTCCGCCTACCTCTCAGATGATGCCGCCTTCTGCGCGATTTCCGTTCAAGTCTGTGATCTCCCCTGCGTCCCTGCATTTGGATTCTATGAACGCTTCTCCTTACGACGGAACGCATTCCGGAAATTTCAATGTCGATTCCGGAAAGAAAAGGAGAGGCCGGCCGAGGAAGTACGATCCTGATGGTAATATCATCGCCTTGGGTTTGGCACCTACCACTGTTGTTACCTCTTCTGTTGTGCACGGGGATTTGAGCGCTACTCCTGATTTGGAGCAACCGGTCAGGAAACCGAGGGGAAGGCCGCGGGGCTCTGGAAAGAAACAGACGAATGCTCTTGGTTCAAGCGGCACTAGTTTTACTCCTTACGCCGTATTGGCGAAGCCTGGAGAGGATGTAGTAGCCAAAATTTTGTCATACTCACAGCAAGGAACACGAACCGCCTTTATTCTCTCTGCAAATGGTACCATCAGTAATGCTACCCTTAGACATTCGGCATTGTCTGGTGGTTCTGTGACATATAAGGGCCAGTTTGAGATCATCTCTCTGTCAGGCCCCATTTTTCCCTTGGAGAACAATGAAACTGGAAGTAGAACAGGTGGTTTGAATGTGCTCCTGGCTGGGTCAGATGGACAGGTTCTTGGTGGTGGTGTTGCAGGAATGCTCATGGCAGGTTCTCAAGTACAGGTGATTGTGGGAAATTTTCTGGAGGATGATAAAAATTTCAACACCACAAGTATGCTGAATTCTGGATCGTCTTCAGCGCCATTACAAATGATGAACTTTGGTGGTGGTGGTGGTGGTGATGCAGCATCGTCGTCATCAGCAGTAGCAGCAGCAGCAGCAGCCAGCCCTCGATCGTTAGGGGCATCGAGCGGGGAGTCATCTGCTGAAAACGGAGAGAGCCCTCTTAATAATAGGCATCCTGGAATGTTCAATAATAATAATAATACCAGCCAGCCGATGCACAATAATAATCAGATGTACCACCAATTATGGTCAGGCCAAACGCAGCAGTGA 1143 49.52 MDSRDTPPPPLSAPSNMAIGGPSAYSTAMTNANNNASSNMALFPPTSQMMPPSARFPFKSVISPASLHLDSMNASPYDGTHSGNFNVDSGKKRRGRPRKYDPDGNIIALGLAPTTVVTSSVVHGDLSATPDLEQPVRKPRGRPRGSGKKQTNALGSSGTSFTPYAVLAKPGEDVVAKILSYSQQGTRTAFILSANGTISNATLRHSALSGGSVTYKGQFEIISLSGPIFPLENNETGSRTGGLNVLLAGSDGQVLGGGVAGMLMAGSQVQVIVGNFLEDDKNFNTTSMLNSGSSSAPLQMMNFGGGGGGDAASSSSAVAAAAAASPRSLGASSGESSAENGESPLNNRHPGMFNNNNNTSQPMHNNNQMYHQLWSGQTQQ 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
15 1895199 1900274 + Cp4.1LG15g02210.1 Cpe15g00219 481677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe15g00219 380 CDD DUF296 162 276 IPR005175 -
Cpe15g00219 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 8 46 343 - -
Cpe15g00219 380 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 46 343 IPR039605 GO:0003680
Cpe15g00219 380 ProSiteProfiles PPC domain profile profile. 158 299 IPR005175 -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 1 23 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 329 366 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 126 157 - -
Cpe15g00219 380 Gene3D - 164 290 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 87 101 - -
Cpe15g00219 380 SUPERFAMILY AF0104/ALDC/Ptd012-like 159 278 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 328 366 - -
Cpe15g00219 380 MobiDBLite consensus disorder prediction 73 101 - -
Cpe15g00219 380 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe14g00855 Cpe15g00219 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe07g00979 Cpe-Chr7:8848659 Cpe15g00219 Cpe-Chr15:1895199 1.24E-38 dispersed
Cpe11g01011 Cpe-Chr11:8526798 Cpe15g00219 Cpe-Chr15:1895199 1.95E-38 dispersed
Cpe13g00070 Cpe-Chr13:546126 Cpe15g00219 Cpe-Chr15:1895199 2.12E-21 dispersed
Cpe14g00855 Cpe-Chr14:7073358 Cpe15g00219 Cpe-Chr15:1895199 6.40E-21 dispersed
Cpe10g00262 Cpe-Chr10:1572195 Cpe15g00219 Cpe-Chr15:1895199 1.68E-10 transposed
Cpe14g00956 Cpe-Chr14:8067717 Cpe15g00219 Cpe-Chr15:1895199 6.01E-37 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe05g00182 Cpe-Chr5:955937 4.41E-103 wgd
Cpe15g00219 Cpe-Chr15:1895199 Cpe08g00855 Cpe-Chr8:6762323 1.88E-62 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe15g00219 - - cmos:111463805 635.565