Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe16g00373 ATGGAGGACAAGCGAGGTATCAGCAGCAACAAGCCAACCGAAAAATGGATGGCATTTGACAGAGAATCAAACACAACAAACACTCCTGGAAATGAAGCAAAAGTAGACAGAAAAAGCTGGCAAGCTTCTGCCACAGGGGCAATATCAACAGAAGCAATCATAGCAGAGAGGGCGGCGGAGTGGGGACTGGTGGTGGAGACGGACGTGGAAGAGGGCAGTTTCAAGGCCGTTGGGAGAGCATCAGGGGAAGGAGGGGGCAGCAAAAGATTATCAGGGAAAATCAGTGGCACAGAAAGAACACCAAGCTTTAGCAATGAAACTTCTGGAGTTTTTCCAAGGGCATCACAAGAGTTGAAGGATGCTTTGTCTTCTTTGGAACAGACATTTGTAGTCTCTGATGCCACCAAACCAGAGTGTCCCATCGTGTATGCGAGCAGTGGATTCTTTGGCATGACTGGTTATGCTTCAGAGGAGGTCATTGGAAAGAACTGTCGTTTTCTTCAGGGACCAGAAACGGACCAGAAAGAAGTTGACAAAATTCGATATGCAGTGAAAAATGGCAAAAGCTACTGCGGAAGGCTCTTGAACTACAAGAAGAATGGCACTCCTTTCTGGAATCTGCTGACAGTCACGCCTATCAAGGATGACAATGGCAATACTATCAAATTTATTGGAATGCAGGTAGAAGTAAGCAAGTACACAGAAGGCATAAATGAGAAAGCATTACGACCAAACGGATTGCCAAAGTCATTAATCCGATATGATGCTCGCCAGAAGGAAAAGGCAATGGGTTCGATCACAGAGGTTGTTCAGACTGTGAAGAATCCCCGTTCTCATTATCGAGCAATGAGTCATGACACCACCAGAAAAAAAGAAGATTTGGAGAAGTTCAATCTTGACTATGTTCTTCCGAAGTCCATTCTAGCTGCAAATGCTACACCAGTAAGACAGACTCCTCAACAGGACCTGAGAGATGATGGTTTAGGCAAGAAACCTAGGTTATCAAGTCGGGTTTCTTTCACGGGGCTCAAAGGGAAATCTCTAAGCAGTTCAAGGAAGCTTGAAGTAATAGCCTTTGAACCAGAAATTTTGATGACCGATGAAATCGAACGGACTGATAGTTGGGACCGTTCTGAAAGAGAAAGGGATATTCGCCAAGGAATTGATTTAGCTACCACATTGGAGCGCATTGAGAAAAATTTTGTCATTACGGATCCAAGGCTTCCGGATAATCCAATTATATTTGCATCCGACAGCTTTCTTGAATTGACAGAATATACACGTGAAGAAATTTTGGGACGAAACTGTCGGTTTCTTCAAGGACCTGAAACAGATCAAGACACTGTCACAAGGATAAGGGATGCAATTAGGGAACAAAGAGAAGTGACTGTTCAGTTGATCAACTATACCAAGACTGGTAAGAAGTTCTGGAATTTATTCCACTTGCAACCGATGCGAGATGAAACGGTTAAAGCCACTGCAGAAAATGTTGATGAGGCTGTCCGTGAACTTCCTGATGCCAACTTGAGACCAGAAGATTTGTGGTCAATGCATTCTCAACCAGTCTTCCCCAGGCCTCACAAGAAGCACAGTTCTTCTTGGACTGCTATACAAAAGATTATTCGACGTGGTGAAAAAATTGGACTCCAACATTTTAAGCCAATTAAACCACTGGGTTGTGGAGACACCGGCAGTGTTCATCTGGTGGAACTTCTAGGTACAAGTGAACTTTATGCCTTGAAAGCAATGGAGAAATCAGCACTTTTGAATCGAAACAAGGTCCACAGAGCATGTATTGAAAGGCAAATCATTGCGCTCCTGGATCATCCTTTTCTTCCAACACTATACACTTCATTTGAGACCGCTACACACGTTTGTTTGATAACCGACTTTTGTGCTGGTGGGGAGTTGTTTGCATTACTTGACAAGCAGCCAATGAAAATGTTTAAAGAGGATTCTGCAAGGTTCTATGCTGCTGAGGTCGTCATTGGCTTGGAGTATCTTCACTGTCTAGGTGACTTTGATCTTTTAGGAATCATTTATCGAGATCTGAAGCCTGAAAATATTCTTCTCCAGAAGGATGGGCACGTTACACTTGCTGACTTCGATTTATCACTTGTGACATCCTGCAAACCGCAGATTGTGAAGTATCCATTGCATCACGGTAGAAGGAGATCACGAAGTCAACCACCGCCAGTATTTGTTGCAGAGCCGATCACGCAATCAAATTCTTTCGTTGGAACTGAAGAGTATATTGCTCCTGAAATTATAACAGGGGAAGGTCACAGCAGCTCTATCGATTGGTGGGCTCTTGGTATATTGTTGTATGAGATGCTTTATGGTCGCACGCCTTTCAGGGGAAAGAACAGGCAGAAGACTTTTGGTAACATCTTGCACAAAGATCTCACCTTTCCAAGTAGCATACAGGTAAGTCTTGCAGCAAGGCAGTTGATCAATGCATTGCTTCAAAGAGACCCCACGAGACGTTTGGGATCGAGTACAGGTGCAAATGAAATCAAACAGCACCCCTTCTTCCAATCAATCAACTGGCCGCTGATCCGGTGTACGGTCCCGCCACCATTAGAATCGCCTCTTCATCTTACTGGGAAAGGTGAAAGAGACAAGAACGTAAACTGGGAAGATGATGGGGTGCTTAGCTCAGTGGATATGGATTTTTTCTGA 2682 44.11 MEDKRGISSNKPTEKWMAFDRESNTTNTPGNEAKVDRKSWQASATGAISTEAIIAERAAEWGLVVETDVEEGSFKAVGRASGEGGGSKRLSGKISGTERTPSFSNETSGVFPRASQELKDALSSLEQTFVVSDATKPECPIVYASSGFFGMTGYASEEVIGKNCRFLQGPETDQKEVDKIRYAVKNGKSYCGRLLNYKKNGTPFWNLLTVTPIKDDNGNTIKFIGMQVEVSKYTEGINEKALRPNGLPKSLIRYDARQKEKAMGSITEVVQTVKNPRSHYRAMSHDTTRKKEDLEKFNLDYVLPKSILAANATPVRQTPQQDLRDDGLGKKPRLSSRVSFTGLKGKSLSSSRKLEVIAFEPEILMTDEIERTDSWDRSERERDIRQGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYTREEILGRNCRFLQGPETDQDTVTRIRDAIREQREVTVQLINYTKTGKKFWNLFHLQPMRDETVKATAENVDEAVRELPDANLRPEDLWSMHSQPVFPRPHKKHSSSWTAIQKIIRRGEKIGLQHFKPIKPLGCGDTGSVHLVELLGTSELYALKAMEKSALLNRNKVHRACIERQIIALLDHPFLPTLYTSFETATHVCLITDFCAGGELFALLDKQPMKMFKEDSARFYAAEVVIGLEYLHCLGDFDLLGIIYRDLKPENILLQKDGHVTLADFDLSLVTSCKPQIVKYPLHHGRRRSRSQPPPVFVAEPITQSNSFVGTEEYIAPEIITGEGHSSSIDWWALGILLYEMLYGRTPFRGKNRQKTFGNILHKDLTFPSSIQVSLAARQLINALLQRDPTRRLGSSTGANEIKQHPFFQSINWPLIRCTVPPPLESPLHLTGKGERDKNVNWEDDGVLSSVDMDFF 893
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
16 5385784 5397471 + Cp4.1LG16g03650.1 Cpe16g00373 482748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe16g00373 893 SMART pac_2 463 500 IPR001610 -
Cpe16g00373 893 SMART pac_2 191 233 IPR001610 -
Cpe16g00373 893 CDD PAS 401 488 IPR000014 -
Cpe16g00373 893 ProSiteProfiles PAC domain profile. 188 242 IPR000700 -
Cpe16g00373 893 CDD STKc_phototropin_like 550 864 - -
Cpe16g00373 893 MobiDBLite consensus disorder prediction 93 110 - -
Cpe16g00373 893 PANTHER BNAA02G07840D PROTEIN 86 488 - -
Cpe16g00373 893 CDD PAS 141 230 IPR000014 -
Cpe16g00373 893 ProSitePatterns Protein kinases ATP-binding region signature. 558 581 IPR017441 GO:0005524
Cpe16g00373 893 ProSitePatterns Serine/Threonine protein kinases active-site signature. 679 691 IPR008271 GO:0004672|GO:0006468
Cpe16g00373 893 TIGRFAM sensory_box: PAS domain S-box protein 140 231 IPR000014 -
Cpe16g00373 893 TIGRFAM sensory_box: PAS domain S-box protein 411 491 IPR000014 -
Cpe16g00373 893 MobiDBLite consensus disorder prediction 19 34 - -
Cpe16g00373 893 SMART serkin_6 552 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00373 893 SUPERFAMILY PYP-like sensor domain (PAS domain) 135 227 IPR035965 -
Cpe16g00373 893 SUPERFAMILY PYP-like sensor domain (PAS domain) 402 488 IPR035965 -
Cpe16g00373 893 ProSiteProfiles PAS repeat profile. 386 459 IPR000014 -
Cpe16g00373 893 MobiDBLite consensus disorder prediction 1 18 - -
Cpe16g00373 893 ProSiteProfiles PAS repeat profile. 114 187 IPR000014 -
Cpe16g00373 893 PANTHER FLIPPASE KINASE 1-RELATED 86 488 - -
Cpe16g00373 893 SUPERFAMILY Protein kinase-like (PK-like) 528 865 IPR011009 -
Cpe16g00373 893 Gene3D PAS domain 375 504 - -
Cpe16g00373 893 ProSiteProfiles Protein kinase domain profile. 552 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00373 893 PANTHER FLIPPASE KINASE 1-RELATED 489 891 - -
Cpe16g00373 893 Pfam Protein kinase domain 554 845 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe16g00373 893 Gene3D Phosphorylase Kinase; domain 1 551 635 - -
Cpe16g00373 893 Gene3D Transferase(Phosphotransferase) domain 1 636 862 - -
Cpe16g00373 893 MobiDBLite consensus disorder prediction 76 110 - -
Cpe16g00373 893 Gene3D PAS domain 128 298 - -
Cpe16g00373 893 PANTHER BNAA02G07840D PROTEIN 489 891 - -
Cpe16g00373 893 Pfam PAS domain 135 231 IPR000014 -
Cpe16g00373 893 Pfam PAS domain 409 489 IPR000014 -
Cpe16g00373 893 MobiDBLite consensus disorder prediction 1 44 - -
Cpe16g00373 893 SMART pas_2 116 185 IPR000014 -
Cpe16g00373 893 SMART pas_2 388 457 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe15g00667 Cpe16g00373 CCT
Cpe05g01329 Cpe16g00373 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe05g00878 Cpe-Chr5:5791431 Cpe16g00373 Cpe-Chr16:5385784 0 dispersed
Cpe15g00667 Cpe-Chr15:7292808 Cpe16g00373 Cpe-Chr16:5385784 5.16E-16 dispersed
Cpe16g00373 Cpe-Chr16:5385784 Cpe16g00570 Cpe-Chr16:6489886 0 dispersed
Cpe16g00373 Cpe-Chr16:5385784 Cpe05g01329 Cpe-Chr5:9339804 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62889 PF00069 Pkinase 5.20E-59 CL0016 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe16g00373 K20715 - csv:101215355 1597.02