Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe17g00068 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCCCATCTCAAGAAGGAAATGTCCAAATTTCTTCTCTCTGGAACTTCCGCTGACTCGAACTCTGACCACCAAATCCAGTATCATCATCATCACCATCAGCGTTCTCAATCGATATCGCCTCAGCGCTCTAGATTTGCTGCGGCTCAGAGGAGAGGTGGCGCTGCTGGAGGTTCAGACAGCGCCGCGGCGGCGTGGAAGAAAGGCTCTTCCTCGTTTCGGCATTCTTCTCCACTTCAGAGGGAGAGTAGGACTTGTGAACCCTCGAATGCCGCCGCCGGAGTCGGAACCAGCGGCGGCTCTGGCCCCGCCGCCGTTAATTTCACCAACAAACAGTATCTCAATATCTTGCAGTCAATGGGACAGTCTGTTCATATTTTAGACCTAAATTATCGCATAATTTACTGGAACCGAGCTGCTGAAATCGTGTATGGATATTCTGCGGCGGAGGCTCTCGGCCAGGATGGCATTGCGCTTCTAGTAGACTCTGAGGACTTTGCCTTTGCAAATGATGTAATTCTTCGTGTTATGGCGGGTAAGCATTGGACTGGTCACTTCCCTGTGAAGAACAAGATGGGGCAGAAGTTTATAGTTGTTGCCACCGACACTCCCTTCTACGATGATGGTGTATTGGTCGGGATCATCTGTATATCGAGCGACTCACGGCCATTTCAAGAGTTGAAGATTCCTTTAGCAGCAGGTTCTAAACAGCAGGATGCAGATTCAAGCATTGTCCGATCAAGAAGCACGGTTTCAACTAAACTTGGTCTTGATCCTCAGCAGCCTCTGCAAGTAGCAATTGCTTCAAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGAACTGGAGAAAACAGCTTGGATCGTGAAGGTGGAAGCGGAGATGGTTATCACTCTGATCATGGCTTTCCAGATGCAACTCTTCGTGACCATCGGGAGGACGCAAATTCAAGTGGAGCTAGCACACCTCGTGGAGATTCCACGACGCATGGTGAGTTTTCCCAGGTTGAAGAGCAATTATCTGGCAAACAGGTCAGGAATCATGATGATGAGGTTAAAGGAAAGCCTACCATTCAGAAGATGTTATCCTCAAAAGCAGAAGAGTGGATTGCTAAGAAGGGCTTATCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGGGCAGGCCGTTTTGCCTGGCCTTGGTTACAAAATGATCAAGAAGTTGAACCAGCAAATCATAAGAGTTGCTCTTNAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGGGCAGGCCATTTTGCCTGGCCTTGGTTACAAAATGATCAAGAAGCTGAACCAGCAAATCATAAGAGTTGCTCTCCATCTGGGAGACCAGAAATGCAGCAAAACGACGGTCATCGAGCAGCCAATAACGAGGCCTCGGGATCCTGGTCATCGTTCAATGTTAACAGCACAAGCAGTGCCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAGGTCGACTCGGAAACAGACTGCTTGGATTTTGAAATCTTGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTTAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCCCTGATGAAAAAACTCCGACACCCGAACATTCTTCTCTTTATGGGAGTTGTGACTTCGCCTCAGCGTCTTTGCATAGTCACGGAATTCCTCCCACGGTTCGTTCTCCACTACCAATCTTGGTTTAACATTTTTTATTTATGTTTCCGAAGCATTCTCCATAGGCTGATTGAAATGTCTGTGAAGAATACAGAGGTCAGCACAGTAAATGGCGTACAGCAGCAACCGCGTCGCCTTCGTGCTCTCGCAAGGTTGTCTCGACAATCTTCTTGTCCAACTGTAAACATTACAACAACAGATCCGGGGATGGATTAG 2040 48.04 MGTPPAEELLRKIQELEEGQAHLKKEMSKFLLSGTSADSNSDHQIQYHHHHHQRSQSISPQRSRFAAAQRRGGAAGGSDSAAAAWKKGSSSFRHSSPLQRESRTCEPSNAAAGVGTSGGSGPAAVNFTNKQYLNILQSMGQSVHILDLNYRIIYWNRAAEIVYGYSAAEALGQDGIALLVDSEDFAFANDVILRVMAGKHWTGHFPVKNKMGQKFIVVATDTPFYDDGVLVGIICISSDSRPFQELKIPLAAGSKQQDADSSIVRSRSTVSTKLGLDPQQPLQVAIASKLSNLASKVSNKVKSKIRTGENSLDREGGSGDGYHSDHGFPDATLRDHREDANSSGASTPRGDSTTHGEFSQVEEQLSGKQVRNHDDEVKGKPTIQKMLSSKAEEWIAKKGLSWPWKGTEQEGGSEARAGRFAWPWLQNDQEVEPANHKSCSXKGPSRKEDLKQGQAILPGLGYKMIKKLNQQIIRVALHLGDQKCSKTTVIEQPITRPRDPGHRSMLTAQAVPVAVEVPVVVLSTRSTRKQTAWILKSCSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRFVLHYQSWFNIFYLCFRSILHRLIEMSVKNTEVSTVNGVQQQPRRLRALARLSRQSSCPTVNITTTDPGMD 679
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
17 406723 410830 + Cp4.1LG17g00310.1 Cpe17g00068 483386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe17g00068 679 SUPERFAMILY PYP-like sensor domain (PAS domain) 132 239 IPR035965 -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 367 381 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 305 385 - -
Cpe17g00068 679 SUPERFAMILY Protein kinase-like (PK-like) 530 612 IPR011009 -
Cpe17g00068 679 TIGRFAM sensory_box: PAS domain S-box protein 130 239 IPR000014 -
Cpe17g00068 679 CDD PAS 139 239 IPR000014 -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 37 432 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 538 626 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 20 120 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 305 342 - -
Cpe17g00068 679 Coils Coil 6 26 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 89 120 - -
Cpe17g00068 679 Gene3D Phosphorylase Kinase; domain 1 530 606 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 37 432 - -
Cpe17g00068 679 PANTHER SERINE/THREONINE-PROTEIN KINASE DDB_G0282963 ISOFORM X1-RELATED 538 626 - -
Cpe17g00068 679 ProSiteProfiles Protein kinase domain profile. 529 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cpe17g00068 679 Pfam Protein tyrosine and serine/threonine kinase 535 607 IPR001245 GO:0004672|GO:0006468
Cpe17g00068 679 Pfam PAS fold 131 236 IPR013767 GO:0006355
Cpe17g00068 679 Gene3D PAS domain 140 242 - -
Cpe17g00068 679 MobiDBLite consensus disorder prediction 343 366 - -
Cpe17g00068 679 ProSiteProfiles PAS repeat profile. 128 199 IPR000014 -
Cpe17g00068 679 SMART pas_2 130 197 IPR000014 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe12g00324 Cpe17g00068 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe17g00068 Cpe-Chr17:406723 Cpe18g00079 Cpe-Chr18:2046181 5.64E-19 dispersed
Cpe12g00324 Cpe-Chr12:2140956 Cpe17g00068 Cpe-Chr17:406723 1.18E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
62925 PF13426 PAS_9 2.00E-08 CL0183 Cpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe17g00068 - - cpep:111778099 791.571