Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe18g00810 GAGAGAGAGAAGACTTTGGGAGGGAGATTCCTTCATAAACCTCCCCCATTCACCCCCTCCCCTCCTTCCGGATGCCAAATCTCTCTTCCTCTTCTTTCATGGGCGTCGGATTCCCCCTCCGACCTACCGGACCTTTATCTTCCTTGCATGGACGGCGCCACCGCCGCCTCTCTTGATCGCTCCTCCCACGCAAATCAATATCATGAAACGCCGGAAGCGCCCGAGGATTTCTACTCCGATTCCGGACTCTCACATCTTCCGCTGGCCGAGGCTCCGGTTCTAGTGCTTATTAAATTCCACACAGCGCTGCGATCCGAGCTTGCGGATTTACGGCGCGTGACGTTGGCCGCGGCGGAGAGTGGGTGTTATGGCCGGGAGTTCGTGTCGGAGTTGATCCGGAGAGTTGAGTTTCTGAAACTTGCTTATAAGTATCATTGCGCCGCCGAGGATGAGCATGAAAGCTTAGATGGCCTCTTCGCCTCCATTTCTGAACACTGTGAAGAAATCAATGCAGAGAACAAAGATATCTCCAAGCCATTTCAGGAACTGGTTTTCTGTTTGGGCACAATTCAAACCACCATTTGCCAGCATATGATCAAAGAAGAACAACAGGTTTTTCCGTTGCTGATGAAACAGTTCTCTGCAAGAGAACAGGCGTCACTTGTGTGGCAATTCATTTGCAGTGTGCCGATGATACTATTGGAGGAGCTTCTGCCATGGATGATGTCTTTTCTTCCATCGGAGCAACAATCGGAAGTCGTAATCTGCCTACGAGATGTAGTGCCGAACGAGAAACTTCTGCAAGAGGTGATAATGTCTTGGCTTGGCAACAGTGAGGCGCCTTGTAGAGATGTAGAAGCAGAAGTTATGAAGGTGCATTCATCTCAGGACAGTGGACAGAGCCCCGTCGATAGCCTCCACCTCTGGCATGGTGCCATTATGAAGGATCTGAAGGAAGTTCTAAAATGTCTATTCCAACTCAAGAGCTGCTCGTCAACAGCTCTTTCTAATCTTGATTCCTTGGTTGTCCAAATAAGGTTCCTGGCTGATGTAATTCTTTTTTATCGAAAGGCATTGGAGAAATTCTTTCGTCCAGTGTTCAATCAATATTCCGACGCATACCTAATCTCCTCCGACCAGGCATTTCTTAGTGATAGTCATATTGAAGCCTTACAACGGCTGCTGCAGCATGGTGCCCACGACACTATACCTTTGAGCAGCTTTTTGGAAAAATTGTGCTGGGACATGGAGTCGTTTGTTGTACGAGTTAGCAAACAGTTCATTTTTCAAGAAACGAAGGTGCTTCCAGTGATTAGAAGGAGCTGCAGCCATAAAATACAGCAACAGCTTCTGTATATGAGCCTCCGCACCTTGCCACTTGGGCTCTTGAAGTGTATTGTTGGTTGGTTTTCAACTCACTTATCTGAGGAAGAAATGAGATCTGTACTTCACACCAAATCGAAGGGAGATCTTCGGGTCAACAATGCGCTTGTTGCCCTCTTACATGAGTGGTTACGAATTGGCTACTCGGGCAAAACTTCGGTCGAACAATTTGGACAAGAATTGCAGAAAATTTTTCAAACCAGAAGCTATTTGTTGCATGGACAGGTGGATCAAACGAAGGGAGTTGTTGGAACTTTATCCTTGAGCTCAAATGTTCAATCTCATAAGGGCTCAAACTCTGAGGAAATTGGATTACTTTCCAACAACAAGAACAAGGGTTTCATGTCGCATTCTTCACCTGATGGTTCTTGCACTGCTTCAGTGTATGGAACATCTTATTCTAGTGGAATCAATCTGCAGATACATTTTCCAGGAACAGTGAAGGTGCCATGTCCTTACACTAAACATCTTTATGAGGAACGACCACATTCTGCTTCTAATCAGCCAAAACCAATAGACCTCATTTTCTTCTTCCACAAAGCTCTCAAGAAAGAATTGGATTACTTTGTTCTTGGTTCGGCTAAGATGGTTGAAAATGTTGGGATCTTGACAGAGTTTATCAGGCGGTTCCAATTGGTAAAATATTTATACCAAATCCATACGGATGCTGAGGACCAGATTGCTTTTCCAGCATTGGAGAAGAAGGGAAAGTTCCAAAATATTAGCTACTCCTACTCCATTGATCATAAACTTGAAGTACACCAATTCAGTACAATATCCCTCATTCTTAATGAAATGTCTGAATTGCACGCTTCGATTTTTTATGGCAATACTGATAGGAAAATGTTTGGTCACCGGCAGCTCTGTCTGGAACTCCATGATATGTGCCAATCGCTGCACAAGTCGCTCTCTGACCATGTTGATCGTGAAGAAATTGAGCTTTGGCCCTTGTTCAGAGAATTCTTCTCAATCGAAGAGCAAGAAAAGCTCATTGGAGCAATATTTGGCAGAACAAAAGCTGAAATATTGCAAGATATGATACCTTGGCAAATGGCATATTTAACACCTTCTGATCAACATGACATGATGTCTATGTTCCACAAGGTTACAAGGAATACAATGTTCAATGAATGGTTAAGAGAGTGGTGGGAAGGTTATGACCATGAGAGAGTGACAGCTGAGGTGGCAACTACTACTCCCTCATTGACTTCAGATCCCTTGGAAATCATCTCAAAATATCTTTCCACGGAAGTAACTGATGTATGTGAAGGAAATGTTTTTGGAAAACCCATCACCTCAGAACAGAATGAAGGTCAATGGCATGCAACCGATGTCGAGAAGGCGGTAATATTCAACTTGAATGATGAAACAAAAGATTTTGATGGCAGCCAACGTAACAAAACATTTGAAGAATGCACAAAACTTGTTTCTCATGGGGATGTTGATAGGGATGCTGATGTTATCACAGAACATATGATCGATACAGAACGACCTGAAGAACATGAGAAATCAATCCAACATGACCACCTTCTTACAATTAGTCAAGAAGATCTGGAAGCAGCAATAAGAAGGGTCTCGAGAGACTCATCCTTAGACCCCAAAACTAAATCCTATATGATACAGAATTTGCTAATGAGCCGTTGGAATGCCAAGCACCATACCCAATTAGAGACGAACGTTACAACGGAAAGCCAAGGATTTGCAGGTCAGTATCCATCCTATAAGGATTCTTTGAAGAAAGAATTTGGTTGCAAACATTACAAAAGAAACTGCAAGCTTCTAGCTCCATGTTGCAACCAACTACACACATGCATACATTGTCATGATGAGACAACCGATCACTCGTTGGATAGAAAATCCATCACAAAGATGATGTGCATGAACTGCTTGGTAGTTCAGCCTATTGGCAAGACATGTTCAACCGTCTCTTGTGGCAATTTGTCAATGGGAAAATATTTCTGCAAGATCTGCAAACTATTTGACGATTCTAGAGATATCTACCATTGTCCATACTGCAACCTGTGCCGAGTGGGAAAGGGATTGGGGATTGACTACTTCCATTGCATGAACTGCAATGCCTGCATGTCCCGTGCACTCTCAGTTCATGTTTGCAGAGAGAAGTGCCTTGAAGACAACTGCCCTATTTGCCACGAATACATCTTCACTTCCACCCTTCCAGTCAAGTCCCTCCCATGTGGCCATTTGATGCATTCAGCATGTTTTCAGGAATACACCTACACACATTATACCTGCCCTATCTGTAGCAAGTCACTGGGAGACATGCAGGTGTACTTTGAGATGCTGGATGCATTGTTGGCTGAAGAGAAAATTCCAGATGAGTATTCTGGGAAAACTCAGGTCATACTGTGCAATGACTGTGAGAAGCGTGGAATGGCAGCATTCCACTGGTTGTACCATAAATGTCCCTTCTGCGGTTCATATAATACTAGGGTATTGTAA 3843 43.87 EREKTLGGRFLHKPPPFTPSPPSGCQISLPLLSWASDSPSDLPDLYLPCMDGATAASLDRSSHANQYHETPEAPEDFYSDSGLSHLPLAEAPVLVLIKFHTALRSELADLRRVTLAAAESGCYGREFVSELIRRVEFLKLAYKYHCAAEDEHESLDGLFASISEHCEEINAENKDISKPFQELVFCLGTIQTTICQHMIKEEQQVFPLLMKQFSAREQASLVWQFICSVPMILLEELLPWMMSFLPSEQQSEVVICLRDVVPNEKLLQEVIMSWLGNSEAPCRDVEAEVMKVHSSQDSGQSPVDSLHLWHGAIMKDLKEVLKCLFQLKSCSSTALSNLDSLVVQIRFLADVILFYRKALEKFFRPVFNQYSDAYLISSDQAFLSDSHIEALQRLLQHGAHDTIPLSSFLEKLCWDMESFVVRVSKQFIFQETKVLPVIRRSCSHKIQQQLLYMSLRTLPLGLLKCIVGWFSTHLSEEEMRSVLHTKSKGDLRVNNALVALLHEWLRIGYSGKTSVEQFGQELQKIFQTRSYLLHGQVDQTKGVVGTLSLSSNVQSHKGSNSEEIGLLSNNKNKGFMSHSSPDGSCTASVYGTSYSSGINLQIHFPGTVKVPCPYTKHLYEERPHSASNQPKPIDLIFFFHKALKKELDYFVLGSAKMVENVGILTEFIRRFQLVKYLYQIHTDAEDQIAFPALEKKGKFQNISYSYSIDHKLEVHQFSTISLILNEMSELHASIFYGNTDRKMFGHRQLCLELHDMCQSLHKSLSDHVDREEIELWPLFREFFSIEEQEKLIGAIFGRTKAEILQDMIPWQMAYLTPSDQHDMMSMFHKVTRNTMFNEWLREWWEGYDHERVTAEVATTTPSLTSDPLEIISKYLSTEVTDVCEGNVFGKPITSEQNEGQWHATDVEKAVIFNLNDETKDFDGSQRNKTFEECTKLVSHGDVDRDADVITEHMIDTERPEEHEKSIQHDHLLTISQEDLEAAIRRVSRDSSLDPKTKSYMIQNLLMSRWNAKHHTQLETNVTTESQGFAGQYPSYKDSLKKEFGCKHYKRNCKLLAPCCNQLHTCIHCHDETTDHSLDRKSITKMMCMNCLVVQPIGKTCSTVSCGNLSMGKYFCKICKLFDDSRDIYHCPYCNLCRVGKGLGIDYFHCMNCNACMSRALSVHVCREKCLEDNCPICHEYIFTSTLPVKSLPCGHLMHSACFQEYTYTHYTCPICSKSLGDMQVYFEMLDALLAEEKIPDEYSGKTQVILCNDCEKRGMAAFHWLYHKCPFCGSYNTRVL 1280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7551304 7558541 - Cp4.1LG18g08120.1 Cpe18g00810 485271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe18g00810 1280 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 84 280 - -
Cpe18g00810 1280 Pfam CHY zinc finger 1045 1120 IPR008913 GO:0008270
Cpe18g00810 1280 ProSiteProfiles Zinc finger CHY-type profile. 1038 1107 IPR008913 GO:0008270
Cpe18g00810 1280 CDD Hr-like 634 777 - -
Cpe18g00810 1280 CDD RING-H2_Pirh2 1173 1216 - -
Cpe18g00810 1280 ProSiteProfiles Zinc finger RING-type profile. 1174 1216 IPR001841 -
Cpe18g00810 1280 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 287 1280 - -
Cpe18g00810 1280 CDD Hr-like 95 207 - -
Cpe18g00810 1280 Gene3D nmb1532 protein domain like 150 227 - -
Cpe18g00810 1280 Gene3D nmb1532 protein domain like 627 798 - -
Cpe18g00810 1280 ProSiteProfiles Zinc finger CTCHY-type profile. 1110 1173 IPR017921 -
Cpe18g00810 1280 SUPERFAMILY Zinc hairpin stack 1111 1165 IPR037275 -
Cpe18g00810 1280 MobiDBLite consensus disorder prediction 1 24 - -
Cpe18g00810 1280 Gene3D - 1245 1280 - -
Cpe18g00810 1280 SUPERFAMILY RING/U-box 1161 1220 - -
Cpe18g00810 1280 SMART ring_2 1174 1215 IPR001841 -
Cpe18g00810 1280 Pfam Ring finger domain 1172 1215 IPR001841 -
Cpe18g00810 1280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 84 280 - -
Cpe18g00810 1280 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 287 1280 - -
Cpe18g00810 1280 SUPERFAMILY CHY zinc finger-like 1036 1101 IPR037274 GO:0008270
Cpe18g00810 1280 Pfam Zinc-ribbon 1221 1278 IPR039512 -
Cpe18g00810 1280 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1167 1218 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe04g01394 Cpe18g00810 CCT
Cpe04g01394 Cpe18g00810 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe01g01334 Cpe-Chr1:8026755 Cpe18g00810 Cpe-Chr18:7551304 3.25E-07 dispersed
Cpe18g00697 Cpe-Chr18:6931390 Cpe18g00810 Cpe-Chr18:7551304 2.87E-11 dispersed
Cpe18g00810 Cpe-Chr18:7551304 Cpe19g00436 Cpe-Chr19:3894247 3.31E-22 dispersed
Cpe18g00810 Cpe-Chr18:7551304 Cpe04g01394 Cpe-Chr4:11273317 6.32E-12 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe18g00810 K16276 - csv:101212459 2120.51