Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cpe19g00846 ATGAGGATTATTTTTGTGTTGTTCTTTGGGCTCCTGTTGTTTTCCGGTGGTTTCTCTTCCTCCGCCGCCGACATCAGGGCGGAGATTCAGGCATTGATGTCTTTTAAGCTTAACCTTCATGACCCTCTTGGTGCATTGACTGGGTGGGATTCTTCAACCCCTTTGGCGCCTTGTGACTGGAGAGGCGTTTTATGTGTCAATAATCGTGTCACTGATCTTCGTTTGCCTCGTCTTCAACTTTCCGGCCGGTTGACCGATCAGTTGGCTAATTTGCCGATGCTCCGGAAGTTGAGTATTCGATCTAATTTCTTCAATGGTACCATTCCCTCTTCTTTGTCGAAATGTGCGTTTCTACGTTCGATTTTCTTACAGTACAACTCGTTTTCCGGTGACCTTCCGGTGGAGTTTGGGAACTTAACCAATCTCCATATTCTCAACGTGGCGGCGAATCGTCTCTCCGGCGGAATTCCCGACGACCTTCCGAGCAGTCTAAAGTATCTCGATCTTTCGTCGAATGCATTCTCCGGTCAGATTCCGAGGAGCGTTGTGAATATGACGGAGCTTCAGGTTGTGAATCTCTCTTTCAATAGATTTGGCGGCGAGATTCCGGCGAGCTTTGGTGAGCTGCAGAAGCTTAAACATCTTTGGTTGGATCATAATGTTTTAGAAGGGACATTACCTTCGGCTCTTGCGAATTGTTCTTCGCTTGTTCATTTGAGCGTTGAGGGAAATGCTCTTCAAGGCATAATCCCGACAGCCATCGGAGCTCTTCCGAATCTTCAAGCTATTTCGCTCTCGCAAAATAGTCTCACTGGTTCAGTTCCTTACTCTCTGTTTTGCAATGTGTCGTCTCATGCGCCGTCTCTTCGAATCGTTCAACTTGGATTTAATGCGTTCACGGATATTGTCAAACCTCCGACAGCGACATGTTTTAGTGTTCTACAGGTCCTTGATATCCAACACAATCAGATAAAGGGGGAATTCCCCTTGTGGTTAATGGGTATTCCGACATTGACAGTCTTGGATTTTTCTGTCAATAATCTCTCCGGCGCGATTCCTCCCGGAATTGGGAATCTCTCGGGATTACAAGAGCTTAAAATGGCTAACAATTCGTTCCACGGCGCGATTCCGTCGGAAATCAAGAACTGTACTTCGATTTCTATTTTGAATCTCAGTGCTAATAGTTTTTCTGGGAAGATTCCGTCCAGTCTTGGCAGTCTCTTCAAGCTAACCACCTTGGATTTGAGCAAACAGAATCTCTCCGGCGAGCTGCCGTTTGAGCTCTCTGGTTTGCCTAATTTGCAGGTGATTGCTCTACAAGAGAACAAGCTATCTGGGAAAGTTCCTGATGGATTCAGTAGTTTAATGGGTTTGCGGTATCTGAATCTAAGCTCTAATGGATTTTCCGGCGAAATCCCTTCAAATTATGGGTTTCTCCGATCACTTGTTTCACTGTCGTTGTCGAAAAATCACATTTCTGGGTCGATCCCTTCAGAGCTAGGGAACTGCTCTGTTCTAGAACATTTGGAGGTCCGTTCAAATGCTCTTTCCGGCGATATTCCGGCGGATATTTCTCGTTTATCTCATCTAGAAGAGCTCGATTTGGGTGGAAATAATTTAACTGGCGAAATCCCTGAAGAGATCTCTCGTTGCTTGTCTTTAAAATCGCTCCTTCTCGACTCGAATCGTCTCTCCGGTAGCATACCGGAGTCGTTATCAGAGCTCTTGAACTTAACCGAGCTCGACCTCTCATCCAACAATTTGAGTGGCGTTATTCCTCTTAATCTTAGTTCAATTACTGGATTAGTGAGGTTAAACGTCTCGAGTAATGATCTAGAAGGCGAAATCCCAGCTGGTTTAGGCTCTAGATTCAATAACTCAGCTGTGTTTGCTAATAATTCCAAGCTATGTGGGAAACCATTGGCTTGGAATTGTAAGGATACAAAGAAAAAAGATAGAACAAAGAGATTGATATTATTCATAGCAGTGGCCGCCAGTGGAGCTTGTCTTTTGGCTTTGTGTTGCTGCTTTTACATTTTCAGCTTGTTGCGATGGCGGAAGAGGCTCAAAGAGAGGGCGTCCGGCGAGAAGAAAACAAGCCCAGCAAGGGTTAGCTCAGCGGCAAGTGGCGGCCGTGGAAGCACAGAAAATGGAGGGCCAAAGCTTGTGATGTTCAACAACAAGATCACTCTAGCTGAAACAATTGAAGCGACAAGGCAATTCGATGAAGAAAATGTTCTAAGCAGGACACGTTATGGGTTAGTTTTCAAAGCTTGTTACAACGACGGCATGCCTGGCTTGCTCGAGCTGGACCCTGAATCCTCTGAATGGGAAGAGTTTTTGCTTGGTGTGAAAGTTGGATTACTTTGCACTGCACCCGATCCCCGCGATCGACCAGCCATGTCGGATATCGTTTTCATGCTCGAAGGATGTCGTGTTGGACCCGACATCCCTTCCTCGGCTGATCCCACCTCCCAACCGTCACCGGCG 2490 46.22 MRIIFVLFFGLLLFSGGFSSSAADIRAEIQALMSFKLNLHDPLGALTGWDSSTPLAPCDWRGVLCVNNRVTDLRLPRLQLSGRLTDQLANLPMLRKLSIRSNFFNGTIPSSLSKCAFLRSIFLQYNSFSGDLPVEFGNLTNLHILNVAANRLSGGIPDDLPSSLKYLDLSSNAFSGQIPRSVVNMTELQVVNLSFNRFGGEIPASFGELQKLKHLWLDHNVLEGTLPSALANCSSLVHLSVEGNALQGIIPTAIGALPNLQAISLSQNSLTGSVPYSLFCNVSSHAPSLRIVQLGFNAFTDIVKPPTATCFSVLQVLDIQHNQIKGEFPLWLMGIPTLTVLDFSVNNLSGAIPPGIGNLSGLQELKMANNSFHGAIPSEIKNCTSISILNLSANSFSGKIPSSLGSLFKLTTLDLSKQNLSGELPFELSGLPNLQVIALQENKLSGKVPDGFSSLMGLRYLNLSSNGFSGEIPSNYGFLRSLVSLSLSKNHISGSIPSELGNCSVLEHLEVRSNALSGDIPADISRLSHLEELDLGGNNLTGEIPEEISRCLSLKSLLLDSNRLSGSIPESLSELLNLTELDLSSNNLSGVIPLNLSSITGLVRLNVSSNDLEGEIPAGLGSRFNNSAVFANNSKLCGKPLAWNCKDTKKKDRTKRLILFIAVAASGACLLALCCCFYIFSLLRWRKRLKERASGEKKTSPARVSSAASGGRGSTENGGPKLVMFNNKITLAETIEATRQFDEENVLSRTRYGLVFKACYNDGMPGLLELDPESSEWEEFLLGVKVGLLCTAPDPRDRPAMSDIVFMLEGCRVGPDIPSSADPTSQPSPA 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
19 6260586 6263980 + Cp4.1LG19g08970.1 Cpe19g00846 486254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cpe19g00846 830 ProSiteProfiles Leucine-rich repeat profile. 577 598 IPR001611 GO:0005515
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 23 161 IPR032675 -
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 162 278 IPR032675 -
Cpe19g00846 830 MobiDBLite consensus disorder prediction 694 721 - -
Cpe19g00846 830 SMART LRR_sd22_2 139 169 - -
Cpe19g00846 830 SMART LRR_sd22_2 527 550 - -
Cpe19g00846 830 SMART LRR_sd22_2 575 596 - -
Cpe19g00846 830 SMART LRR_sd22_2 257 284 - -
Cpe19g00846 830 SMART LRR_sd22_2 209 235 - -
Cpe19g00846 830 SMART LRR_sd22_2 479 511 - -
Cpe19g00846 830 Pfam Leucine rich repeat 187 246 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 480 540 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 553 612 IPR001611 GO:0005515
Cpe19g00846 830 Pfam Leucine rich repeat 409 467 IPR001611 GO:0005515
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 18 391 - -
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 288 764 - -
Cpe19g00846 830 PANTHER LRR RECEPTOR-LIKE KINASE 765 826 - -
Cpe19g00846 830 SMART LRR_typ_2 91 115 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 527 551 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 479 503 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 185 208 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 209 232 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 257 281 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 575 599 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 335 359 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 139 163 IPR003591 -
Cpe19g00846 830 SMART LRR_typ_2 431 454 IPR003591 -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 18 391 - -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 288 764 - -
Cpe19g00846 830 Gene3D Ribonuclease Inhibitor 279 654 IPR032675 -
Cpe19g00846 830 SUPERFAMILY L domain-like 27 302 - -
Cpe19g00846 830 SUPERFAMILY RNI-like 309 643 - -
Cpe19g00846 830 Pfam Leucine rich repeat N-terminal domain 28 65 IPR013210 -
Cpe19g00846 830 MobiDBLite consensus disorder prediction 699 713 - -
Cpe19g00846 830 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 765 826 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cpe10g00650 Cpe19g00846 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cpe14g00684 Cpe-Chr14:4488459 Cpe19g00846 Cpe-Chr19:6260586 5.73E-06 dispersed
Cpe19g00846 Cpe-Chr19:6260586 Cpe07g00505 Cpe-Chr7:3319669 9.96E-40 dispersed
Cpe10g00650 Cpe-Chr10:3742794 Cpe19g00846 Cpe-Chr19:6260586 1.11E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cpe19g00846 - - eus:EUTSA_v10024296mg 815.839