Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cre05g2519 | ATGAGAGCCTTTTCGGTTTCTAAGTGTCTAAAAGTTAACGTTCATTCAAGGACAACTGTAAGTTGTTCATCGAGATTCATGTGTGTGTTGCACTCACATGGCCTCACACTTAATCGACATTTCTGCTATTCTGGTCGATTGTTACTCGACATTTCTGACTGGTGTTACCGACAGATGAAGGATGAAGTGAAATGCAGGATCCTCGCTTCTTTTAGTTCTGTGATCCTTGCTAGGCCTTCAGTTTCTGCCGCTCGGCTTGAAGCGGAATCCGTCACTACCTCCTTCGTTCTGGACCAGAATGACCCAGTTTGTGAAATTCTTACGGGTTTAAATTCCTTTGGGTTTAGAGCGTATGTTGGTGGATGTAACTTTCGAACTGTTGTTTCTACTTTGAGCGAAACTGTAGTGGATGAGGTTCTTGATAGCTTGAGAACTCAGAATCCTGATGTTGCTGTGGCTTTTTTCTATTTGTTAAGAAATGAGTACGGATTTCGGCATTCCAGATTCTCCCAGTTTGCTGTTTCTCATATTTTAGCGGGTAAAGGACGATTCAAGGAGTTGCATTCCGTTATAAAGCAATTGCTTGAGGAGCAAGGGTCTGGTTCTGCATCTACATGTTGTGACCTGCTCTTGAACAAATTCAGGAATTGGGATTCAAATAGTGTGGTATGGGATATGCTGGCATTTGTATACTCTAGACATGAAATGATCCATGATGCCCTCTTCGTCATTGCAAAGATGAAGGATCTAAATTTACAAGCTTCAGTTCCAACTTATAACTCTCTATTGCATAACTTGAGGCACACTGATATTATGTGGAATCTATACAGTGAGATAAAAGTTAGAGCTCCCCATAGTGAATATACTAACTCAATACTTATGCACGGCCTATGTGAGCAATCCAAGTTACAAGATGCAATTTCATTCCTACAGGACAGCAATGAAGTAGTTGGACCTTCTATTGTGTCTATCAATACCATAATGTCAAAGTTTTGCAAAGTGGGGCTAATAGATGTTGCGAGGTCATTTTTTTGTTTGATGGTAAAAAATGGACTGCTTCCTGATTCCTACAGTTATAATATTCTTGTTCATGGGTTATGTGTAGCAGGTTCCATGGACGAAGCTCTGGAATTCACAGATGACATGGAAAAGCATGGTGTGGAACCTGATGTAGTAACATACAACACACTCGCCAAAGGATTTCTCCTGCTTGGTTTGATGAGTGGGGCCCAGAAAGTTGTCCAGAAAATGTTGCTGAAAGGTCTAAATCCAGATCTTGTGACATATACAATACTGATGTGTGGACATTGTCAAATGGGAAATATTGAGGAAGCTCTTAAACTGCGGCAAGAAACTCTTTCAAGGGGGTTTAAGTTGAATATCATTTCCTACAGCGTGCTACTTAGCTGTTTGTGTAAAGTTGGACGTATAGAAGAAGCATTGACATTGCTTGATGAAATGGAAACTTTACGTTTAAAACCTGATTTTATAGTATATTCAATCCTCATTCATGGCCTCTGCAAGGAAGGGTTTGTGCAAAGGGCTTACCAACTATATGAACAAATGTGCTTGAAGAGAATTTTTCCAAACTACTTTGCTCAACGTGCTGTACTGTTAGGTCTATTTGAGAATGGAAATATATCTGAGGCAAGAAAGTATTTTGATGCTTTGACTCACATGGATCTGATAGAGGATGTTGTTTTGTATAATATTATGATTGATGGTTACGTAAGACTTGGTGATATTGCTGAGGCTATGCAGCTATATTACAGAATGATTGAAAGGGGGATCACTCCAAGTGTTGTCACTTTCAACACTCTTATCAAAGGATTCTGCAGAATGGGAGACCTAGTGGAGGCTCGAAAGATGTTGGAAGTTATTAGGTTGAATGGATTGCTACCTAGTGTGGTAACTTATACTACCCTAATGAATGCGTACTGTGAAGTGGGAAACATGCAGGAAATGTTTCATCTTCTTCATGAGATGGAGGCAAACGCTGTTGTTCCAACTCATGTAACTTATACTGTACTAATCAAAGGACTTTGCAGACAGAATAAGATGCATGAGGCCCTCCAGTTGCTTGAGTATATGTATGCAAAGGGTCTAATGCCAGATCCGGTCACATATAATACCATTATCCAATGTTTATGCAAGGGAAGAGACATTGACAAAGCTTTCCAGCTTTATAATAAGATGTTGCTCCATAATCTTGATCCTACCCATGTAACTTATAACGTACTTATTAATGGTCTTTGTATATATGGTGACCTAAAGGATGCTGATCGAATGCTAGTTTCTATGGAGGATCGAAATATAAGCTTGACAAAAGTTGCTTATATGACAATAATTAAAGCACATTGTGCAAAGGGTCAGGTCTCTAAAGCGTTAGGGTTCTTCAATCAAATGTTGGCTAAGAGTTTTGTTATTTCCATTAGAGATTATAGCGCTATCATTAATCGGCTGTGCAAAAGGGGTCTAATTACTGAAGCGAAGTACTTCTTTGTTATGATGTTATCAGAAGGCGTAACTCCTGATTCTGAAATTTGTGAGACAATGCTTAATGCTTTCCATCAACAGGGCGACAACAGTTTAGTGTTAGAATTCCTTTCTATGGGTGTAGAGGATAAATTTCCCTCGGAGGAATATTTCAAACTTTATGCCACAGATCATCAACGAAAGGAAAATCATGTCAATGACCCTCATGGGGAGATCTCCCAGCTTTGGAGGCTGCAGCAGACTTATTGA | 2745 | 39.53 | MRAFSVSKCLKVNVHSRTTVSCSSRFMCVLHSHGLTLNRHFCYSGRLLLDISDWCYRQMKDEVKCRILASFSSVILARPSVSAARLEAESVTTSFVLDQNDPVCEILTGLNSFGFRAYVGGCNFRTVVSTLSETVVDEVLDSLRTQNPDVAVAFFYLLRNEYGFRHSRFSQFAVSHILAGKGRFKELHSVIKQLLEEQGSGSASTCCDLLLNKFRNWDSNSVVWDMLAFVYSRHEMIHDALFVIAKMKDLNLQASVPTYNSLLHNLRHTDIMWNLYSEIKVRAPHSEYTNSILMHGLCEQSKLQDAISFLQDSNEVVGPSIVSINTIMSKFCKVGLIDVARSFFCLMVKNGLLPDSYSYNILVHGLCVAGSMDEALEFTDDMEKHGVEPDVVTYNTLAKGFLLLGLMSGAQKVVQKMLLKGLNPDLVTYTILMCGHCQMGNIEEALKLRQETLSRGFKLNIISYSVLLSCLCKVGRIEEALTLLDEMETLRLKPDFIVYSILIHGLCKEGFVQRAYQLYEQMCLKRIFPNYFAQRAVLLGLFENGNISEARKYFDALTHMDLIEDVVLYNIMIDGYVRLGDIAEAMQLYYRMIERGITPSVVTFNTLIKGFCRMGDLVEARKMLEVIRLNGLLPSVVTYTTLMNAYCEVGNMQEMFHLLHEMEANAVVPTHVTYTVLIKGLCRQNKMHEALQLLEYMYAKGLMPDPVTYNTIIQCLCKGRDIDKAFQLYNKMLLHNLDPTHVTYNVLINGLCIYGDLKDADRMLVSMEDRNISLTKVAYMTIIKAHCAKGQVSKALGFFNQMLAKSFVISIRDYSAIINRLCKRGLITEAKYFFVMMLSEGVTPDSEICETMLNAFHQQGDNSLVLEFLSMGVEDKFPSEEYFKLYATDHQRKENHVNDPHGEISQLWRLQQTY | 914 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 36553565 | 36558593 | - | CrPI670011_05g025190.1 | Cre05g2519 | 499032 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 775 | 809 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 355 | 389 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 460 | 494 | IPR002885 | - | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 281 | 405 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 390 | 424 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat family | 634 | 683 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat family | 460 | 508 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat family | 704 | 752 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat family | 565 | 613 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat family | 319 | 367 | IPR002885 | - | |
| Cre05g2519 | 914 | PANTHER | OS03G0856100 PROTEIN | 275 | 612 | - | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 670 | 704 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 497 | 530 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 462 | 495 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 357 | 391 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 427 | 460 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 567 | 600 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 672 | 705 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 742 | 774 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 322 | 356 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 602 | 635 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 707 | 740 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 814 | 846 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 637 | 670 | IPR002885 | - | |
| Cre05g2519 | 914 | NCBIfam | pentatricopeptide repeat | 777 | 810 | IPR002885 | - | |
| Cre05g2519 | 914 | SUPERFAMILY | TPR-like | 369 | 558 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | Pfam | PPR repeat | 777 | 805 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat | 814 | 842 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 425 | 459 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 635 | 669 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 740 | 774 | IPR002885 | - | |
| Cre05g2519 | 914 | Pfam | PPR repeat | 420 | 450 | IPR002885 | - | |
| Cre05g2519 | 914 | SUPERFAMILY | HCP-like | 541 | 760 | - | - | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 767 | 908 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 410 | 560 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 705 | 739 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 495 | 529 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 565 | 599 | IPR002885 | - | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 628 | 698 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 122 | 280 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 699 | 766 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | Gene3D | Tetratricopeptide repeat domain | 561 | 627 | IPR011990 | GO:0005515(InterPro) | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 320 | 354 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 600 | 634 | IPR002885 | - | |
| Cre05g2519 | 914 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 810 | 844 | IPR002885 | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cre05g2519 | - | - | - | 0.0 |