Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre07g1995 ATGCCTGCAGACAAACATGATGAGAGACATAATATGATTAAAAATTCTAAAGAAGAGAATTCACCTCCTCCAAAACTAGCAGCAGCAGGAGGTTCATCAAGCTCATCGTTGGCGGCGACCACGCCATGGCTTAGGTTGAAGGATCCGAGGATCGTGCGCGTGTCGCGAGCTTTCGGAGGCAAGGATCGACACAGCAAAGTTTGTACCATAAGAGGGCTGCGCGACAGGCGTGTAAGGCTTTCGGTTTCAACCGCAATTCAGCTCTATGATCTTCAAGACCGGCTTGGGCTTAATCAGCCGAGCAAGGTCGTCGACTGGTTGCTGAACGCCGCCAAGGATGAAATCGACGAACTCCCTCCATTGCCAATCCCATCGGCAAGCCTTGGCCTTCACTATCAATCTATGCTACCACCAACCGTGCACCACCCGCATAGATCGGAGTTCAAAATCAACTGCATCAACAAGGCCGAGGTCGAGGATGAGACCGAATTGGAAAAGCAACAGAAATCAAATAATAATTCTAATAATCCCTCTCATCCTTCTTCCTTCTCAGCCCTTTTGAACAATGTGTCTGCCCCTCCATTTGGGTTTTATTGGGATCATAATCCTCCATCATCATCAACATCATCAACAACAACAAATAATCTCCCATTTCTTACATCTCAACAACCTCAGGATAATAATAATCTTCATAACTTCAATCATCTCAATTTGTGTTTGCCTTCCCCTTTGTCTCTTGAGTTCAATCACTTGCACCAAAATTTCTTCATTAACAATAATTCTCTCAATAATACACCTCCTAATTTCCACCCCGCTGTTAGGCCTTTTCATTTTAGTATGGCTACCAAATTCCTTTCTCAAGACAAGAATAACAATAATAATGCAGATAATCCTCCAAATAAGGATCATGGCTTTGCTTCTGATGAATGA 930 43.76 MPADKHDERHNMIKNSKEENSPPPKLAAAGGSSSSSLAATTPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVSTAIQLYDLQDRLGLNQPSKVVDWLLNAAKDEIDELPPLPIPSASLGLHYQSMLPPTVHHPHRSEFKINCINKAEVEDETELEKQQKSNNNSNNPSHPSSFSALLNNVSAPPFGFYWDHNPPSSSTSSTTTNNLPFLTSQQPQDNNNLHNFNHLNLCLPSPLSLEFNHLHQNFFINNNSLNNTPPNFHPAVRPFHFSMATKFLSQDKNNNNNADNPPNKDHGFASDE 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 35445646 35447148 - CrPI670011_07g019950.1 Cre07g1995 504576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre07g1995 309 ProSiteProfiles TCP domain profile. 60 118 IPR017887 -
Cre07g1995 309 MobiDBLite consensus disorder prediction 1 36 - -
Cre07g1995 309 MobiDBLite consensus disorder prediction 1 16 - -
Cre07g1995 309 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 24 275 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)|GO:2000032(PANTHER)
Cre07g1995 309 MobiDBLite consensus disorder prediction 168 185 - -
Cre07g1995 309 MobiDBLite consensus disorder prediction 287 309 - -
Cre07g1995 309 Pfam TCP family transcription factor 60 175 IPR017887 -
Cre07g1995 309 MobiDBLite consensus disorder prediction 159 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre01g1507 Cre-Chr1:28314057 Cre07g1995 Cre-Chr7:35445646 6.30E-31 dispersed
Cre03g1057 Cre-Chr3:9565258 Cre07g1995 Cre-Chr7:35445646 4.60E-24 dispersed
Cre04g2079 Cre-Chr4:38007276 Cre07g1995 Cre-Chr7:35445646 1.60E-24 dispersed
Cre06g2419 Cre-Chr6:32088076 Cre07g1995 Cre-Chr7:35445646 1.40E-33 dispersed
Cre07g1995 Cre-Chr7:35445646 Cre11g2169 Cre-Chr11:33395295 1.70E-19 dispersed
Cre11g1026 Cre-Chr11:7583715 Cre07g1995 Cre-Chr7:35445646 2.00E-11 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54107 PF03634 TCP 5.10E-28 No_clan Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre07g1995 - - - 0.0