Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cre11g0793 ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTATAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA 579 43.01 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSITDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY 192
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 5151634 5155240 - CrPI670011_11g007930.1 Cre11g0793 512538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cre11g0793 192 CDD HMG-box_SF 120 156 - -
Cre11g0793 192 Gene3D High mobility group box domain 105 161 IPR036910 -
Cre11g0793 192 Pfam YABBY protein 8 166 IPR006780 GO:0007275(InterPro)
Cre11g0793 192 PANTHER PROTEIN YABBY 6-RELATED 8 177 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
Cre11g0793 192 FunFam axial regulator YABBY 5-like 104 162 - -
Cre11g0793 192 SUPERFAMILY HMG-box 109 159 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cre08g1731 Cre-Chr8:29543392 Cre11g0793 Cre-Chr11:5151634 6.70E-19 dispersed
Cre09g2142 Cre-Chr9:40436043 Cre11g0793 Cre-Chr11:5151634 2.70E-41 dispersed
Cre10g0542 Cre-Chr10:4934869 Cre11g0793 Cre-Chr11:5151634 6.60E-38 dispersed
Cre02g2560 Cre-Chr2:38856095 Cre11g0793 Cre-Chr11:5151634 2.10E-48 transposed
Cre05g2533 Cre-Chr5:36647795 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
Cre05g2549 Cre-Chr5:36767805 Cre11g0793 Cre-Chr11:5151634 1.20E-30 transposed
Cre11g0793 Cre-Chr11:5151634 Cre06g1989 Cre-Chr6:27349901 2.60E-71 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54656 PF04690 YABBY 1.20E-70 CL0114 Cre TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cre11g0793 K25796 - csv:101219877 385.571