Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cre11g0793 | ATGTCAAGCTGCATCAACAGTGCTCAAGAACAACTCTGCTATATCCCCTGCAATTTTTGCAATATTGTTCTAGCGGTGAGTGTTCCATGCAATAATCTCTTTGACATCGTGACCGTCCGATGTGGTCACTGCAGCAATCTCTGGTCTGTGAACATGGCTGCTGCTTTCCAATCTCTCTCATGGCAAAATTCCCAGGCATCAAACCATAGCCACAGTGGCAGTGGGGCTGATCATTACAGAGTTGAATTGGGATCATCATCAAAATGCAACAACAAGATGAAAATGAGAGCACCAATTAAAAACTCTATAACTGATCATGATCAAAGGATCATTAATCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAATCAGTTTATAAAAGAGGAAATCCAGAGGATCAAAGCAACTAATCCAGATATTACCCACAGGGAAGCATTCAGTACTGCTGCTAAAAATTGGGCACATTTCCCACATATTCATTTTGGCCTCATGCTGGATACCAACAATCTGCAGACCAAGAATGATGGATCTGAGAAGCATCTGATGTCAGTGCCAGGGCTGCACTATTGA | 579 | 43.01 | MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWQNSQASNHSHSGSGADHYRVELGSSSKCNNKMKMRAPIKNSITDHDQRIINRPPEKRQRVPSAYNQFIKEEIQRIKATNPDITHREAFSTAAKNWAHFPHIHFGLMLDTNNLQTKNDGSEKHLMSVPGLHY | 192 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 5151634 | 5155240 | - | CrPI670011_11g007930.1 | Cre11g0793 | 512538 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cre11g0793 | 192 | CDD | HMG-box_SF | 120 | 156 | - | - | |
Cre11g0793 | 192 | Gene3D | High mobility group box domain | 105 | 161 | IPR036910 | - | |
Cre11g0793 | 192 | Pfam | YABBY protein | 8 | 166 | IPR006780 | GO:0007275(InterPro) | |
Cre11g0793 | 192 | PANTHER | PROTEIN YABBY 6-RELATED | 8 | 177 | IPR006780 | GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER) | |
Cre11g0793 | 192 | FunFam | axial regulator YABBY 5-like | 104 | 162 | - | - | |
Cre11g0793 | 192 | SUPERFAMILY | HMG-box | 109 | 159 | IPR036910 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cre08g1731 | Cre-Chr8:29543392 | Cre11g0793 | Cre-Chr11:5151634 | 6.70E-19 | dispersed | |
Cre09g2142 | Cre-Chr9:40436043 | Cre11g0793 | Cre-Chr11:5151634 | 2.70E-41 | dispersed | |
Cre10g0542 | Cre-Chr10:4934869 | Cre11g0793 | Cre-Chr11:5151634 | 6.60E-38 | dispersed | |
Cre02g2560 | Cre-Chr2:38856095 | Cre11g0793 | Cre-Chr11:5151634 | 2.10E-48 | transposed | |
Cre05g2533 | Cre-Chr5:36647795 | Cre11g0793 | Cre-Chr11:5151634 | 1.20E-30 | transposed | |
Cre05g2549 | Cre-Chr5:36767805 | Cre11g0793 | Cre-Chr11:5151634 | 1.20E-30 | transposed | |
Cre11g0793 | Cre-Chr11:5151634 | Cre06g1989 | Cre-Chr6:27349901 | 2.60E-71 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54656 | PF04690 | YABBY | 1.20E-70 | CL0114 | Cre | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cre11g0793 | K25796 | - | csv:101219877 | 385.571 |